FFCP PHASE1:Mm9::chr3:96531690..96531717,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=67845|HGNC=|MCL_coexpression_id=981|UniProt=Q9D0C1|association_with_transcript=156bp_to_ENSMUST00000029740,NM_026406,uc008qoe.2,uc012cuc.1_5end|description=CAGE_peak_2_at_Rnf115_5end|id=chr3:96531690..96531717,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.28e-10!51;UBERON:0000160!2.17e-09!43;UBERON:0005409!6.71e-08!59;UBERON:0004119!7.82e-08!130;UBERON:0000925!7.82e-08!130;UBERON:0006595!7.82e-08!130;UBERON:0001007!2.63e-07!128;UBERON:0001555!2.63e-07!128;UBERON:0007026!2.63e-07!128;UBERON:0002365!3.00e-07!25;UBERON:0002330!3.00e-07!25;UBERON:0004923!3.08e-07!24;UBERON:0000344!7.32e-07!15|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.25e-10,51;UBERON:0000160,6.19e-09,31;UBERON:0002365,2.94e-07,25;UBERON:0002330,2.94e-07,25;UBERON:0004923,3.02e-07,24;UBERON:0005409,4.50e-07,47;UBERON:0000344,7.19e-07,15;UBERON:0004119,7.99e-07,118;UBERON:0000925,7.99e-07,118;UBERON:0006595,7.99e-07,118|phase1_expression=0.640595388419176,19.5426228278042,21.3849642513082,29.9439569193762,31.0555352566735,7.55456723603504,9.34450562382103,0.774739940649458,4.36445038670167,3.04283884218592,0.34243593645101,0.319088635981346,0.684802919724823,0.437102012094987,2.6648780945253,4.656931149966,3.49780939064073,3.78554598429885,4.2505474417779,5.51706547337439,3.91199134694921,5.56029326724958,7.57479388502913,14.8792953197868,10.782236210157,21.8208146363708,15.9381938578858,17.8841123129288,37.624637052362,24.9509828462331,18.8470934057009,0.635030673459631,2.46025915033828,0,3.75507105676657,3.32469290716985,3.26670970019791,29.2972141515835,24.2213956802378,28.2702821745851,39.411509698078,23.9065919735456,26.2175590636823,3.27331726736501,2.93993100536592,3.30384153891027,1.56478268869608,1.30815093828268,2.41654801007919,3.4997381833371,5.73944328663986,4.31257693094915,10.4025215755797,6.5282592781021,11.0910953717013,5.14518872071894,5.73066879877513,4.64104883049698,1.21389876515759,0.528990979272033,0.633831403506179,3.04960078862219,1.77858959222228,7.64914759689189,5.93319817540185,4.9733608046227,4.19440154725767,1.92109152660777,0.829516898467821,0.540023753326763,0.210324961351382,1.71390590642282,1.54607978666129,0.734944795289724,0.575072826109418,0,2.20231761998777,3.31987079021488,3.22573719838111,1.05509030184155,1.37231465403614,1.56274011167028,3.90856198601933,3.93933827022176,3.81995619442025,3.83017161115768,2.84743361598206,0.931997229126503,3.55913108665965,5.51672388779534,17.3918693221007,12.0459342777394,29.2387673494333,32.382191498269,22.0923981932207,21.0572636935748,9.55022056895913,4.60161870960756,5.97507810586598,8.83348936275851,1.26759077799012,6.41632387071589,10.1922095882658,0,1.94841936910093,2.02687892380079,3.0331466700887,17.5843174767352,25.8937883647172,6.08612770165782,0.520455980298408,0.608930956624282,1.84492397804847,2.11011696773672,3.76283862834255,4.52399728786832,7.66304399976559,9.68815691363408,7.07688441559899,2.75003644910596,3.5334642953663,6.30337829075789,26.0948465705371,6.44117753425404,4.1889341362691,31.9321319010739,3.71426885968353,4.19931911695385,4.95573885584952,4.34392854273986,1.37250180845588,0.628271760564322,2.25971616249959,2.30143911597297,3.1168206683934,2.92034273521964,0.916554274652847,7.2156042953854,6.31806896084187,10.7325346502102,1.04096354370163,0.919608417733892,1.26043490863744,0.90422890701429,1.49680298132921,0.896796041993948,1.03071897015702,4.13925393182425,1.29340795759705,1.13463648100692,0.351902248327898,1.53437012699302,1.11218899690239,1.74126083261083,2.26360350048738,1.19420560091096,3.51106593656617,3.3455227924913,6.25159698670304,1.65700618028402,0.938104239924385,1.44049649168812,0.946978942340841,2.36117078096885,1.23413690309903,1.39520366850245,1.3413670069981,1.98501082024188,2.13927804887525,3.2833492815819,2.99954595319666,3.21639972335731,4.17145219052996,3.62357330653004,2.3131894342054,1.54356918568927,67.7358505116786,17.982638533121,1.06644125267617,2.09013004674395,1.41754207454303,2.21851877085677,3.55804870151792,5.32631753115166,18.0321043386914,8.56434564564857,8.79673230800943,11.7384318504279,10.3330966173134,19.7740269903929,19.6685625385972,24.8926591567959,2.0863469104839,1.25673363870702,1.1270773567308,1.83286195060783,2.13347735884388,2.59502533594179,4.04713837595247,6.6424566590821,8.63493003127561,8.51440431060424,21.6410417773619,1.50160595144485,2.35870794135844,2.9232074610031,2.02860121388503,5.06472035480075,4.58326533206556,5.17853047411459,6.48540907100142,4.66754402419738,14.3768206527355,11.1642284300551,7.48890415474945,15.1547326768267,10.225652570749,22.1924019827149,9.60716588866344,1.51593129416388,0.814824882210129,0.848725428875941,2.58159273117352,2.84760637651087,3.57065461329021,3.51240566144038,2.99506773801763,2.21464689648775,4.14582398509466,6.55453258862952,5.52591941970866,7.08780387049407,33.1740824666399,32.0904353453039,11.8023425524569,8.27810238914197,4.17431533968259,4.21962071731931,2.78689407140348,3.53459298086122,3.15508219416257,3.12350995437311,3.23135096599198,3.34556317133573,2.89638276307112,2.83076530788832,3.64329631507405,1.16902343164525,2.37172666767914,2.57057053137446,5.10984306749767,1.24645922567079,1.14020871547503,5.44401405809367,15.9294166007955,0.242780636154981,3.02323556964751,3.20628635585027,2.65771703592696,3.3817866273832,6.97756391554197,5.45300594216258,4.9909632973861,7.9009189483954,8.4334886859999,17.5330423521918,4.08527526904546,1.26042765821917,0.776152102696527,0.857348140126369,0.709360934569094,1.78368817602071,1.31639216481697,0.608929898229199,9.38686832254841,8.47328283455281,18.0833286405069,2.80306630000516,2.74489525383039,1.56813604813205,0.954978752025092,1.80554989719567,11.9507143018239,5.19190845629427,4.78438466233988,3.09580301944834,3.51869602002452,3.57900068308913,3.00727300986255,5.49067615695654,4.58941760983409,4.47844647435706,4.00779924032829,11.4560474161814,0.158167996790568,1.62655573701479,1.40406943068342,1.88179466413022,1.9652630737156,2.29269388854195,5.95104881222419,4.97336289769656,11.4061176496778,10.5627683224777,1.69107881605257,1.34564891439581,0.992750942742586,0.972255941720238,1.03327858782185,1.35164900392623,1.64300134104056,1.95306577265925,2.20204623293993,0.724752362478018,2.30424005006292,1.58005560314089,1.01362607645082,1.1298205288131,1.55904987573354,1.07416017400489,1.39076948346885,2.28371354087941,1.62458479892035,1.9183625490148,1.905170166375,1.51239277705261,2.43644701849381,1.92423683280659,1.28564592399726,4.30787728868902,3.7737612073591,2.33256027184637,2.51826924546118,7.34120457322324,10.6979011007174,4.57879060668163,4.07299920250225,10.0314420807073,1.6942555278512,5.06357760157895,2.29158205375759,3.60891682921744,2.05524755931193,4.5323633843382,4.05013500139084,2.70192721934532,3.62513927187364,3.62432218226274,0.726511433089237,1.19707462020309,0.853668028770671,1.21553358534147,1.67690530102386,1.65459157605013,2.66696073361938,2.67845574410562,0.962757628775446,2.02157769411038,1.01391719956096,2.07488975524684,1.87283014939765,1.92075457214608,1.89537047553524,1.90517476513229,3.1288768005111,2.50781986602817,2.47251540481984,2.64958056241915,2.74295401908332,1.4198064492747,2.38436189947321,1.59881058295561,1.78807822789128,2.03075058940024,1.82927972872773,1.8414879800649,2.17286582153379,2.24456908663095,1.77952527186261,1.57607171800902,2.45538625901814,2.47898945897546,2.3148793317737,0.499621155875892,4.21076895201735,4.72716318906256,5.35607329792761,4.85301122062934,4.17362104116759|short_description=p2@Rnf115}} | ||
|EntrezGene=67845 | |||
|HGNC= | |||
|MCL_coexpression_id=981 | |||
|UniProt=Q9D0C1 | |||
|association_with_transcript=156bp_to_ENSMUST00000029740,NM_026406,uc008qoe.2,uc012cuc.1_5end | |||
|description=CAGE_peak_2_at_Rnf115_5end | |||
|id=chr3:96531690..96531717,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.28e-10!51;UBERON:0000160!2.17e-09!43;UBERON:0005409!6.71e-08!59;UBERON:0004119!7.82e-08!130;UBERON:0000925!7.82e-08!130;UBERON:0006595!7.82e-08!130;UBERON:0001007!2.63e-07!128;UBERON:0001555!2.63e-07!128;UBERON:0007026!2.63e-07!128;UBERON:0002365!3.00e-07!25;UBERON:0002330!3.00e-07!25;UBERON:0004923!3.08e-07!24;UBERON:0000344!7.32e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.25e-10,51;UBERON:0000160,6.19e-09,31;UBERON:0002365,2.94e-07,25;UBERON:0002330,2.94e-07,25;UBERON:0004923,3.02e-07,24;UBERON:0005409,4.50e-07,47;UBERON:0000344,7.19e-07,15;UBERON:0004119,7.99e-07,118;UBERON:0000925,7.99e-07,118;UBERON:0006595,7.99e-07,118 | |||
|phase1_expression=0.640595388419176,19.5426228278042,21.3849642513082,29.9439569193762,31.0555352566735,7.55456723603504,9.34450562382103,0.774739940649458,4.36445038670167,3.04283884218592,0.34243593645101,0.319088635981346,0.684802919724823,0.437102012094987,2.6648780945253,4.656931149966,3.49780939064073,3.78554598429885,4.2505474417779,5.51706547337439,3.91199134694921,5.56029326724958,7.57479388502913,14.8792953197868,10.782236210157,21.8208146363708,15.9381938578858,17.8841123129288,37.624637052362,24.9509828462331,18.8470934057009,0.635030673459631,2.46025915033828,0,3.75507105676657,3.32469290716985,3.26670970019791,29.2972141515835,24.2213956802378,28.2702821745851,39.411509698078,23.9065919735456,26.2175590636823,3.27331726736501,2.93993100536592,3.30384153891027,1.56478268869608,1.30815093828268,2.41654801007919,3.4997381833371,5.73944328663986,4.31257693094915,10.4025215755797,6.5282592781021,11.0910953717013,5.14518872071894,5.73066879877513,4.64104883049698,1.21389876515759,0.528990979272033,0.633831403506179,3.04960078862219,1.77858959222228,7.64914759689189,5.93319817540185,4.9733608046227,4.19440154725767,1.92109152660777,0.829516898467821,0.540023753326763,0.210324961351382,1.71390590642282,1.54607978666129,0.734944795289724,0.575072826109418,0,2.20231761998777,3.31987079021488,3.22573719838111,1.05509030184155,1.37231465403614,1.56274011167028,3.90856198601933,3.93933827022176,3.81995619442025,3.83017161115768,2.84743361598206,0.931997229126503,3.55913108665965,5.51672388779534,17.3918693221007,12.0459342777394,29.2387673494333,32.382191498269,22.0923981932207,21.0572636935748,9.55022056895913,4.60161870960756,5.97507810586598,8.83348936275851,1.26759077799012,6.41632387071589,10.1922095882658,0,1.94841936910093,2.02687892380079,3.0331466700887,17.5843174767352,25.8937883647172,6.08612770165782,0.520455980298408,0.608930956624282,1.84492397804847,2.11011696773672,3.76283862834255,4.52399728786832,7.66304399976559,9.68815691363408,7.07688441559899,2.75003644910596,3.5334642953663,6.30337829075789,26.0948465705371,6.44117753425404,4.1889341362691,31.9321319010739,3.71426885968353,4.19931911695385,4.95573885584952,4.34392854273986,1.37250180845588,0.628271760564322,2.25971616249959,2.30143911597297,3.1168206683934,2.92034273521964,0.916554274652847,7.2156042953854,6.31806896084187,10.7325346502102,1.04096354370163,0.919608417733892,1.26043490863744,0.90422890701429,1.49680298132921,0.896796041993948,1.03071897015702,4.13925393182425,1.29340795759705,1.13463648100692,0.351902248327898,1.53437012699302,1.11218899690239,1.74126083261083,2.26360350048738,1.19420560091096,3.51106593656617,3.3455227924913,6.25159698670304,1.65700618028402,0.938104239924385,1.44049649168812,0.946978942340841,2.36117078096885,1.23413690309903,1.39520366850245,1.3413670069981,1.98501082024188,2.13927804887525,3.2833492815819,2.99954595319666,3.21639972335731,4.17145219052996,3.62357330653004,2.3131894342054,1.54356918568927,67.7358505116786,17.982638533121,1.06644125267617,2.09013004674395,1.41754207454303,2.21851877085677,3.55804870151792,5.32631753115166,18.0321043386914,8.56434564564857,8.79673230800943,11.7384318504279,10.3330966173134,19.7740269903929,19.6685625385972,24.8926591567959,2.0863469104839,1.25673363870702,1.1270773567308,1.83286195060783,2.13347735884388,2.59502533594179,4.04713837595247,6.6424566590821,8.63493003127561,8.51440431060424,21.6410417773619,1.50160595144485,2.35870794135844,2.9232074610031,2.02860121388503,5.06472035480075,4.58326533206556,5.17853047411459,6.48540907100142,4.66754402419738,14.3768206527355,11.1642284300551,7.48890415474945,15.1547326768267,10.225652570749,22.1924019827149,9.60716588866344,1.51593129416388,0.814824882210129,0.848725428875941,2.58159273117352,2.84760637651087,3.57065461329021,3.51240566144038,2.99506773801763,2.21464689648775,4.14582398509466,6.55453258862952,5.52591941970866,7.08780387049407,33.1740824666399,32.0904353453039,11.8023425524569,8.27810238914197,4.17431533968259,4.21962071731931,2.78689407140348,3.53459298086122,3.15508219416257,3.12350995437311,3.23135096599198,3.34556317133573,2.89638276307112,2.83076530788832,3.64329631507405,1.16902343164525,2.37172666767914,2.57057053137446,5.10984306749767,1.24645922567079,1.14020871547503,5.44401405809367,15.9294166007955,0.242780636154981,3.02323556964751,3.20628635585027,2.65771703592696,3.3817866273832,6.97756391554197,5.45300594216258,4.9909632973861,7.9009189483954,8.4334886859999,17.5330423521918,4.08527526904546,1.26042765821917,0.776152102696527,0.857348140126369,0.709360934569094,1.78368817602071,1.31639216481697,0.608929898229199,9.38686832254841,8.47328283455281,18.0833286405069,2.80306630000516,2.74489525383039,1.56813604813205,0.954978752025092,1.80554989719567,11.9507143018239,5.19190845629427,4.78438466233988,3.09580301944834,3.51869602002452,3.57900068308913,3.00727300986255,5.49067615695654,4.58941760983409,4.47844647435706,4.00779924032829,11.4560474161814,0.158167996790568,1.62655573701479,1.40406943068342,1.88179466413022,1.9652630737156,2.29269388854195,5.95104881222419,4.97336289769656,11.4061176496778,10.5627683224777,1.69107881605257,1.34564891439581,0.992750942742586,0.972255941720238,1.03327858782185,1.35164900392623,1.64300134104056,1.95306577265925,2.20204623293993,0.724752362478018,2.30424005006292,1.58005560314089,1.01362607645082,1.1298205288131,1.55904987573354,1.07416017400489,1.39076948346885,2.28371354087941,1.62458479892035,1.9183625490148,1.905170166375,1.51239277705261,2.43644701849381,1.92423683280659,1.28564592399726,4.30787728868902,3.7737612073591,2.33256027184637,2.51826924546118,7.34120457322324,10.6979011007174,4.57879060668163,4.07299920250225,10.0314420807073,1.6942555278512,5.06357760157895,2.29158205375759,3.60891682921744,2.05524755931193,4.5323633843382,4.05013500139084,2.70192721934532,3.62513927187364,3.62432218226274,0.726511433089237,1.19707462020309,0.853668028770671,1.21553358534147,1.67690530102386,1.65459157605013,2.66696073361938,2.67845574410562,0.962757628775446,2.02157769411038,1.01391719956096,2.07488975524684,1.87283014939765,1.92075457214608,1.89537047553524,1.90517476513229,3.1288768005111,2.50781986602817,2.47251540481984,2.64958056241915,2.74295401908332,1.4198064492747,2.38436189947321,1.59881058295561,1.78807822789128,2.03075058940024,1.82927972872773,1.8414879800649,2.17286582153379,2.24456908663095,1.77952527186261,1.57607171800902,2.45538625901814,2.47898945897546,2.3148793317737,0.499621155875892,4.21076895201735,4.72716318906256,5.35607329792761,4.85301122062934,4.17362104116759 | |||
|short_description=p2@Rnf115 | |||
}} |
Revision as of 03:09, 14 September 2013
Short description: | p2@Rnf115 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rnf115_5end |
Coexpression cluster: | MCL_coexpression_mm9:981 |
Association with transcript: | 156bp_to_ENSMUST00000029740, NM_026406, uc008qoe.2, uc012cuc.1_5end |
EntrezGene: | Rnf115 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.25e-10 | 51 |
intestine | 6.19e-09 | 31 |
exocrine gland | 2.94e-07 | 25 |
exocrine system | 2.94e-07 | 25 |
organ component layer | 3.02e-07 | 24 |
gastrointestinal system | 4.50e-07 | 47 |
mucosa | 7.19e-07 | 15 |
endoderm-derived structure | 7.99e-07 | 118 |
endoderm | 7.99e-07 | 118 |
presumptive endoderm | 7.99e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.