FFCP PHASE1:Hg19::chr8:32405739..32405749,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3084|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7997|TSSclassifier=S|UniProt=Q02297,F8W9E3,E9PHH4,B0FYA7,B0FYA9,B0FWZ3,B0FYA8,B7Z4Z3,Q6PK61,Q7RTW5,Q7RTW3|association_with_transcript=11bp_to_ENST00000287840,ENST00000287845,ENST00000338921,ENST00000341377,ENST00000356819,ENST00000523079,NM_001160002,NM_001160004,NM_001160005,NM_001160007,NM_001160008,NM_004495,NM_013956,NM_013957,NM_013958,NM_013960,NM_013964,uc003xir.2,uc003xis.2,uc003xit.2,uc003xiu.2,uc003xiv.2,uc003xiw.2,uc010lvl.2,uc010lvm.2,uc010lvn.2,uc010lvo.2,uc011lbf.1_5end|description=CAGE_peak_5_at_NRG1_5end|id=chr8:32405739..32405749,+|ontology_enrichment_celltype=CL:0000066!3.31e-16!254;CL:0002321!9.70e-16!248;CL:0000220!1.22e-15!246;CL:0000055!1.54e-10!180;CL:0000076!2.14e-10!62;CL:0002620!2.56e-08!23;CL:0000057!1.79e-07!75;CL:0002076!9.78e-07!43|ontology_enrichment_celltype_v019=CL:0002620;1.80e-09;23!CL:1000507;1.30e-08;10!CL:1000494;1.30e-08;10!CL:1000497;1.63e-08;17!CL:0002518;1.63e-08;17!CL:1000449;2.08e-07;15!CL:0002681;9.02e-07;12!CL:0002584;9.02e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,2.09e-14,253;CL:0000076,1.13e-10,63;CL:0002620,1.40e-09,23;CL:0002321,1.92e-09,250;CL:1000497,3.98e-09,17;CL:0002518,3.98e-09,17;CL:1000507,5.30e-09,10;CL:1000494,5.30e-09,10;CL:1000449,7.19e-08,15;CL:0002681,4.71e-07,12;CL:0002584,4.71e-07,12;CL:0002159,6.94e-07,14|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1749!1.75e-07!14|ontology_enrichment_disease_v019=DOID:1749;2.10e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,1.13e-08,14|ontology_enrichment_uberon=UBERON:0003102!3.92e-14!95;UBERON:0000475!8.23e-14!365;UBERON:0000468!1.44e-12!659;UBERON:0000481!1.90e-12!347;UBERON:0000467!1.54e-11!625;UBERON:0003104!2.18e-11!238;UBERON:0009142!2.18e-11!238;UBERON:0000480!2.32e-11!626;UBERON:0001444!1.77e-10!48;UBERON:0005256!4.33e-09!143;UBERON:0000483!5.04e-09!309;UBERON:0004119!5.94e-09!169;UBERON:0000925!5.94e-09!169;UBERON:0006595!5.94e-09!169;UBERON:0000119!7.25e-09!312;UBERON:0000922!7.88e-09!612;UBERON:0002050!1.65e-08!605;UBERON:0005423!1.65e-08!605;UBERON:0000923!2.05e-08!604;UBERON:0005291!2.05e-08!604;UBERON:0006598!2.05e-08!604;UBERON:0002532!2.05e-08!604;UBERON:0002100!2.98e-08!216;UBERON:0000165!5.99e-08!28;UBERON:0000930!5.99e-08!28;UBERON:0001004!7.94e-08!72;UBERON:0002097!9.26e-08!40;UBERON:0001007!1.68e-07!155;UBERON:0001555!1.68e-07!155;UBERON:0007026!1.68e-07!155;UBERON:0002199!2.99e-07!45;UBERON:0002416!2.99e-07!45|ontology_enrichment_uberon_v019=UBERON:0004211;1.30e-08;10!UBERON:0009773;1.30e-08;10!UBERON:0001231;1.30e-08;10!UBERON:0004810;1.30e-08;10!UBERON:0001851;4.75e-08;15!UBERON:0006554;1.90e-07;30!UBERON:0001008;1.90e-07;30!UBERON:0006555;2.08e-07;15!UBERON:0004819;2.08e-07;15!UBERON:0001285;2.08e-07;15!UBERON:0007684;2.08e-07;15!UBERON:0001225;9.02e-07;12!UBERON:0008987;9.02e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.89e-11,99;UBERON:0004810,5.30e-09,10;UBERON:0001851,2.47e-08,15;UBERON:0002097,5.45e-08,41;UBERON:0004211,7.19e-08,15;UBERON:0009773,7.19e-08,15;UBERON:0001231,7.19e-08,15;UBERON:0001285,7.19e-08,15;UBERON:0007684,7.19e-08,15;UBERON:0004208,7.19e-08,15;UBERON:0006555,3.51e-07,16;UBERON:0004819,3.51e-07,16;UBERON:0003729,4.57e-07,13;UBERON:0001225,4.71e-07,12;UBERON:0008987,4.71e-07,12|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0.737201809504527,2.79120467188971,0,0,0.866364470720326,0,0.672325146451775,0,1.46062018077475,0.487932798790507,1.35433163884467,0.816002764977012,0.940364164434263,8.30084362680065,4.37998160233229,5.27279086298172,0,0,0,0,0,0,0.919421224478927,4.2168828628955,0.739508020333575,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.336985893439485,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.945348171640679,0.665188192387692,0.43917392846563,0.589405839739707,2.91436230634034,3.33705998505986,0,0,0,0,0,0,2.58391129576717,0.860234595106124,1.38856200643038,1.13061588384802,0.838998872419812,1.10047216776027,2.29894463190492,0.516833518338658,1.06729878806013,0.66944122552934,0,0,0,0.367663080345869,0,1.16089646769304,3.14341121676638,2.47745257063309,0,1.89853131913626,1.09921046358244,0,0,2.61656431285521,0,0.759783069987479,0.397227542439656,0.286836620748814,0,0,0,0.49333509683432,0.622422070799533,0,0.326923806226917,0,0,0.234321431833797,0.312160076830321,1.1409436430889,0.448346041655403,2.23125547423153,1.13311061057692,2.38766371393822,0.204154171254893,1.96534907698829,0.103325781175765,0,1.48360157567134,0,0,3.03005005117319,2.75260743718321,0.277064115484183,0.877955241761676,2.45190236639216,1.05166641234618,0.113432183160021,1.79389635688862,1.92201649936711,1.05965950579781,1.80054657650641,1.23663035086127,1.8034837803194,0.744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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3084 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7997 | |||
|TSSclassifier=S | |||
|UniProt=Q02297,F8W9E3,E9PHH4,B0FYA7,B0FYA9,B0FWZ3,B0FYA8,B7Z4Z3,Q6PK61,Q7RTW5,Q7RTW3 | |||
|association_with_transcript=11bp_to_ENST00000287840,ENST00000287845,ENST00000338921,ENST00000341377,ENST00000356819,ENST00000523079,NM_001160002,NM_001160004,NM_001160005,NM_001160007,NM_001160008,NM_004495,NM_013956,NM_013957,NM_013958,NM_013960,NM_013964,uc003xir.2,uc003xis.2,uc003xit.2,uc003xiu.2,uc003xiv.2,uc003xiw.2,uc010lvl.2,uc010lvm.2,uc010lvn.2,uc010lvo.2,uc011lbf.1_5end | |||
|description=CAGE_peak_5_at_NRG1_5end | |||
|id=chr8:32405739..32405749,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.31e-16!254;CL:0002321!9.70e-16!248;CL:0000220!1.22e-15!246;CL:0000055!1.54e-10!180;CL:0000076!2.14e-10!62;CL:0002620!2.56e-08!23;CL:0000057!1.79e-07!75;CL:0002076!9.78e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.80e-09;23!CL:1000507;1.30e-08;10!CL:1000494;1.30e-08;10!CL:1000497;1.63e-08;17!CL:0002518;1.63e-08;17!CL:1000449;2.08e-07;15!CL:0002681;9.02e-07;12!CL:0002584;9.02e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.09e-14,253;CL:0000076,1.13e-10,63;CL:0002620,1.40e-09,23;CL:0002321,1.92e-09,250;CL:1000497,3.98e-09,17;CL:0002518,3.98e-09,17;CL:1000507,5.30e-09,10;CL:1000494,5.30e-09,10;CL:1000449,7.19e-08,15;CL:0002681,4.71e-07,12;CL:0002584,4.71e-07,12;CL:0002159,6.94e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.75e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.10e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.13e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.92e-14!95;UBERON:0000475!8.23e-14!365;UBERON:0000468!1.44e-12!659;UBERON:0000481!1.90e-12!347;UBERON:0000467!1.54e-11!625;UBERON:0003104!2.18e-11!238;UBERON:0009142!2.18e-11!238;UBERON:0000480!2.32e-11!626;UBERON:0001444!1.77e-10!48;UBERON:0005256!4.33e-09!143;UBERON:0000483!5.04e-09!309;UBERON:0004119!5.94e-09!169;UBERON:0000925!5.94e-09!169;UBERON:0006595!5.94e-09!169;UBERON:0000119!7.25e-09!312;UBERON:0000922!7.88e-09!612;UBERON:0002050!1.65e-08!605;UBERON:0005423!1.65e-08!605;UBERON:0000923!2.05e-08!604;UBERON:0005291!2.05e-08!604;UBERON:0006598!2.05e-08!604;UBERON:0002532!2.05e-08!604;UBERON:0002100!2.98e-08!216;UBERON:0000165!5.99e-08!28;UBERON:0000930!5.99e-08!28;UBERON:0001004!7.94e-08!72;UBERON:0002097!9.26e-08!40;UBERON:0001007!1.68e-07!155;UBERON:0001555!1.68e-07!155;UBERON:0007026!1.68e-07!155;UBERON:0002199!2.99e-07!45;UBERON:0002416!2.99e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.30e-08;10!UBERON:0009773;1.30e-08;10!UBERON:0001231;1.30e-08;10!UBERON:0004810;1.30e-08;10!UBERON:0001851;4.75e-08;15!UBERON:0006554;1.90e-07;30!UBERON:0001008;1.90e-07;30!UBERON:0006555;2.08e-07;15!UBERON:0004819;2.08e-07;15!UBERON:0001285;2.08e-07;15!UBERON:0007684;2.08e-07;15!UBERON:0001225;9.02e-07;12!UBERON:0008987;9.02e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.89e-11,99;UBERON:0004810,5.30e-09,10;UBERON:0001851,2.47e-08,15;UBERON:0002097,5.45e-08,41;UBERON:0004211,7.19e-08,15;UBERON:0009773,7.19e-08,15;UBERON:0001231,7.19e-08,15;UBERON:0001285,7.19e-08,15;UBERON:0007684,7.19e-08,15;UBERON:0004208,7.19e-08,15;UBERON:0006555,3.51e-07,16;UBERON:0004819,3.51e-07,16;UBERON:0003729,4.57e-07,13;UBERON:0001225,4.71e-07,12;UBERON:0008987,4.71e-07,12 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0.737201809504527,2.79120467188971,0,0,0.866364470720326,0,0.672325146451775,0,1.46062018077475,0.487932798790507,1.35433163884467,0.816002764977012,0.940364164434263,8.30084362680065,4.37998160233229,5.27279086298172,0,0,0,0,0,0,0.919421224478927,4.2168828628955,0.739508020333575,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.336985893439485,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.945348171640679,0.665188192387692,0.43917392846563,0.589405839739707,2.91436230634034,3.33705998505986,0,0,0,0,0,0,2.58391129576717,0.860234595106124,1.38856200643038,1.13061588384802,0.838998872419812,1.10047216776027,2.29894463190492,0.516833518338658,1.06729878806013,0.66944122552934,0,0,0,0.367663080345869,0,1.16089646769304,3.14341121676638,2.47745257063309,0,1.89853131913626,1.09921046358244,0,0,2.61656431285521,0,0.759783069987479,0.397227542439656,0.286836620748814,0,0,0,0.49333509683432,0.622422070799533,0,0.326923806226917,0,0,0.234321431833797,0.312160076830321,1.1409436430889,0.448346041655403,2.23125547423153,1.13311061057692,2.38766371393822,0.204154171254893,1.96534907698829,0.103325781175765,0,1.48360157567134,0,0,3.03005005117319,2.75260743718321,0.277064115484183,0.877955241761676,2.45190236639216,1.05166641234618,0.113432183160021,1.79389635688862,1.92201649936711,1.05965950579781,1.80054657650641,1.23663035086127,1.8034837803194,0.744467425326359,1.85653965465393,1.16924406193438,3.02920529092937,1.10459878370759,0,0.710019185033229,1.81353776809752,1.18692414617341,1.93260853163297,3.27295344709002,2.00763216772303,0.487894824518382,0.132529768321485,0.348581828608555,1.34759371519982,0,0,0,0.643240938192885,0,0,0,0.828147600278907,1.34867752062481,0.964044119533928,0.882351781859152,0.871517776369625,2.13543557199987,0.674156540800822,0.392442930250692,0.38474715694639,2.21446636387394,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0.686271241194102,2.63400684980701,4.49607013030478,4.12168786887686,2.22212268380471,0,2.07986957055916,2.88662684050547,0.231860809950154,1.40890433082986,0.144366447761074,0,0.380508304469197,0,0,0,0,0,1.87467667973554,2.68771405118175,2.26840155587818,2.32852159027406,3.48760726216754,4.21720947081732,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0.387815147273333,0,0,0.531876233169741,0,2.05765899409714,0,0.266422179016099,1.00084595560703,0,0,0,1.06617584622764,1.58390374586686,0,0,0.099972991182057,0,0,0,0.239624855491583,0,1.42636905040718,0.434343920002738,0.61642896765115,0.895304816199478,0,0,0,0,2.03275699377971,1.30139853857622,1.54657762555539,0.502548796003046,1.27587750330633,0,0,0,0.36807447515742,0.500170521059677,1.08506009479894,0,0.178428988797162,0,0.117141414992713,0.300946099727719,0,0,1.99267679560631,1.47495334833363,0.868836144680828,0.195801157462741,0,0.206768026122887,0,0,0,0,0,0.248107807818777,0.920771839728375,0.841980283299221,0.256278298511402,0.511707249066704,0.482561763430822,1.48418066444991,0.925258162815933,0.532685175939381,1.23190734020714,4.15403543346897,0.929683027679674,0,1.00253235151642,2.11786274552562,0.459257792658427,0.546273504020151,0.524497659837696,5.41439535488894,3.08061348417659,0,2.92278449306521,1.79437769117889,0,1.70093705276516,0.863663664408557,0,2.43851793789468,1.50506932156456,6.626783099171,2.49322802678617,3.80587083027703,0,0,2.3080511260475,1.31205858279882,0,0.206082023295445,0,0,2.29706215198469,1.30012049207304,0,0.580024309752732,0.462145851343933,0.460511024178389,1.37836572484531,0.107420244868274,0.435050081742686,0.93749290157711,0.445160178233687,1.4875642382488,1.15314040419064,5.87018477475087,0.708104465988849,0,1.88887408098384,1.3940745403212,0,0,2.60979897622522,1.11194531462352,1.00187420719394,1.116475108079,1.2655176988749,0,0.511795582622668,0,0.636406495851874,0.78494864019923,1.07923474549989,0.823611089208164,0.589062011728432,0.404364963146632,0,2.52755073743389,0,2.19342140668156,0,1.50149902548784,0.707027159768564,0,0.551365343546124,1.99031692572366,0,0.578775534266688,0,1.01455188481352,0,0,0.430234056612155,0.0982490410131212,1.07001315444375,0.354761064070598,0.422215270595328,0,0,0.349934720244983,4.13755084719702,0.670302275535787,0,0.753150406214233,2.15252686335615,1.68471475667626,1.33029046061003,2.29723400206959,0,0,0,0,0.411362273086194,0,0,0,0.213648142254946,0,4.90080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,10.8010864357067,0,0.284136146806413,0,0,0.307160702099232,0,0,0.556543525114529,0,0.422250816255987,0,0.276283915531148,0,5.21570280760989,0,1.24415835064723,1.25815691606258,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,0,0,2.61724931056649,2.2882828526349,0.236387681767936,0,2.04123229368278,0,0,0,0,0,0,0.2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| |||
|short_description=p5@NRG1 | |||
}} |
Revision as of 05:06, 14 September 2013
Short description: | p5@NRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_NRG1_5end |
Coexpression cluster: | NA |
Association with transcript: | 11bp_to_ENST00000287840, ENST00000287845, ENST00000338921, ENST00000341377, ENST00000356819, ENST00000523079, NM_001160002, NM_001160004, NM_001160005, NM_001160007, NM_001160008, NM_004495, NM_013956, NM_013957, NM_013958, NM_013960, NM_013964, uc003xir.2, uc003xis.2, uc003xit.2, uc003xiu.2, uc003xiv.2, uc003xiw.2, uc010lvl.2, uc010lvm.2, uc010lvn.2, uc010lvo.2, uc011lbf.1_5end |
EntrezGene: | NRG1 |
HGNC: | 7997 |
UniProt: | Q02297F8W9E3E9PHH4B0FYA7B0FYA9B0FWZ3B0FYA8B7Z4Z3Q6PK61Q7RTW5Q7RTW3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.09e-14 | 253 |
squamous epithelial cell | 1.13e-10 | 63 |
skin fibroblast | 1.40e-09 | 23 |
embryonic cell | 1.92e-09 | 250 |
kidney cell | 3.98e-09 | 17 |
kidney epithelial cell | 3.98e-09 | 17 |
kidney tubule cell | 5.30e-09 | 10 |
nephron tubule epithelial cell | 5.30e-09 | 10 |
epithelial cell of nephron | 7.19e-08 | 15 |
kidney cortical cell | 4.71e-07 | 12 |
renal cortical epithelial cell | 4.71e-07 | 12 |
general ecto-epithelial cell | 6.94e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.89e-11 | 99 |
nephron tubule epithelium | 5.30e-09 | 10 |
cortex | 2.47e-08 | 15 |
skin of body | 5.45e-08 | 41 |
nephron epithelium | 7.19e-08 | 15 |
renal tubule | 7.19e-08 | 15 |
nephron tubule | 7.19e-08 | 15 |
nephron | 7.19e-08 | 15 |
uriniferous tubule | 7.19e-08 | 15 |
nephrogenic mesenchyme | 7.19e-08 | 15 |
excretory tube | 3.51e-07 | 16 |
kidney epithelium | 3.51e-07 | 16 |
mouth mucosa | 4.57e-07 | 13 |
cortex of kidney | 4.71e-07 | 12 |
renal parenchyma | 4.71e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.13e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.