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MCL coexpression mm9:481: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000355!3.53e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004872!1.08e-07!33;UBERON:0001134!3.53e-07!9;UBERON:0002036!3.53e-07!9;UBERON:0002385!3.53e-07!9;UBERON:0000486!3.53e-07!9;UBERON:0007503!3.53e-07!9;UBERON:0001015!3.53e-07!9;UBERON:0002329!3.53e-07!9;UBERON:0003082!3.53e-07!9;UBERON:0003059!3.53e-07!9;UBERON:0007282!3.53e-07!9;UBERON:0004290!3.53e-07!9;UBERON:0009618!3.53e-07!9;UBERON:0004535!5.04e-07!23;UBERON:0001009!5.04e-07!23;UBERON:0000383!5.16e-07!10
}}

Latest revision as of 15:22, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79451334..79451428,+p1@Cnn2
Mm9::chr10:79457763..79457780,+p@chr10:79457763..79457780
+
Mm9::chr10:83996684..83996695,-p2@Ckap4
Mm9::chr10:83996713..83996774,-p1@Ckap4
Mm9::chr12:86940338..86940357,+p1@Jdp2
Mm9::chr18:16433490..16433522,-p1@ENSMUST00000076710
Mm9::chr1:172574580..172574589,+p7@Olfml2b
Mm9::chr1:172574621..172574645,+p3@Olfml2b
Mm9::chr1:172574654..172574701,+p1@Olfml2b
Mm9::chr2:35111885..35111968,+p1@Gsn
Mm9::chr3:93324291..93324313,+p2@Gm12854
p2@S100a11
Mm9::chr4:107562699..107562734,+p2@0610037L13Rik
Mm9::chr6:42299999..42300075,+p1@Zyx
Mm9::chr6:42301541..42301556,+p@chr6:42301541..42301556
+
Mm9::chr7:87532821..87532839,-p4@Fes


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
multi-potent skeletal muscle stem cell3.53e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.66322
MA0004.10.67248
MA0006.10.756673
MA0007.11.87594
MA0009.10.623671
MA0014.12.44286
MA0017.10.420732
MA0019.10.456268
MA0024.10.582844
MA0025.10.845702
MA0027.12.24512
MA0028.10.12472
MA0029.10.562703
MA0030.10.568779
MA0031.10.535959
MA0038.10.358622
MA0040.10.635404
MA0041.11.02627
MA0042.10.98784
MA0043.10.71494
MA0046.10.657417
MA0048.11.52518
MA0050.10.270164
MA0051.10.366328
MA0052.10.642973
MA0055.10.0508438
MA0056.10
MA0057.11.42502
MA0058.10.501197
MA0059.10.522737
MA0060.10.249987
MA0061.10.615538
MA0063.10
MA0066.10.349199
MA0067.10.953264
MA0068.10.0945752
MA0069.11.55187
MA0070.10.634186
MA0071.10.269487
MA0072.10.626238
MA0073.10.0103286
MA0074.10.854077
MA0076.10.148159
MA0077.10.605975
MA0078.10.395048
MA0081.10.56362
MA0083.11.69945
MA0084.11.27474
MA0087.10.673355
MA0088.11.44136
MA0089.10
MA0090.10.212772
MA0091.10.24961
MA0092.10.213012
MA0093.10.40751
MA0095.10
MA0098.10
MA0100.10.309116
MA0101.10.538493
MA0103.10.14251
MA0105.11.85166
MA0106.10.401864
MA0107.10.428571
MA0108.20.476838
MA0109.10
MA0111.10.223614
MA0113.10.377232
MA0114.10.291992
MA0115.10.717599
MA0116.10.37608
MA0117.10.686999
MA0119.10.183219
MA0122.10.705806
MA0124.10.901619
MA0125.10.830088
MA0130.10
MA0131.10.452196
MA0132.10
MA0133.10
MA0135.10.749615
MA0136.10.335579
MA0139.10.0558308
MA0140.10.30902
MA0141.11.47359
MA0142.11.29772
MA0143.11.01504
MA0144.10.617592
MA0145.10.0599431
MA0146.12.36506
MA0147.11.08486
MA0148.10.252062
MA0149.10.18682
MA0062.20.637421
MA0035.20.312946
MA0039.21.92808
MA0138.20.445088
MA0002.20.458095
MA0137.20.467774
MA0104.20.85335
MA0047.20.357963
MA0112.20.819738
MA0065.20.321967
MA0150.10.227466
MA0151.10
MA0152.10.358055
MA0153.10.765498
MA0154.10.752303
MA0155.10.369691
MA0156.10.45173
MA0157.10.493416
MA0158.10
MA0159.10.332142
MA0160.10.254455
MA0161.10
MA0162.12.2179
MA0163.10.832885
MA0164.10.335886
MA0080.20.430071
MA0018.20.344133
MA0099.20.439458
MA0079.25.34084
MA0102.21.32652
MA0258.10.0789466
MA0259.10.621948
MA0442.10
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