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MCL coexpression mm9:656: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_uberon=UBERON:0000160!7.72e-16!31;UBERON:0005409!2.37e-11!47;UBERON:0000344!8.85e-11!15;UBERON:0001242!1.58e-09!13;UBERON:0000060!1.58e-09!13;UBERON:0001262!1.58e-09!13;UBERON:0004786!1.58e-09!13;UBERON:0000485!1.57e-07!11;UBERON:0003350!5.06e-07!9;UBERON:0004808!5.06e-07!9;UBERON:0001277!5.06e-07!9
|tfbs_overrepresentation_for_novel_motifs=1.44698,0.490989,0.7433,0.329881,0.176699,0.342839,0.425757,0.106126,0.112618,2.75824,1.00157,1.06556,0.106288,0.437133,0.189961,0,0.619876,0.170475,0.318616,0.171249,0.238546,0.521547,0.436294,0.175485,0.276437,0.4628,0.630402,0.361771,1.15025,0.500344,0.349031,0.717576,0.504188,0.270473,1.06026,0.308746,2.88023,0.411296,0.144953,0.391645,0.173534,0.353696,0.104243,0.191571,1.11259,0.856658,0.543674,0.376103,0.081888,0.61724,0.603113,0.488021,0.829247,0.855661,0.87275,0.443782,0.223087,0.40287,0.0851299,0.441884,0.698157,1.24284,0.383763,0.592318,0.45416,0.631188,1.00675,1.3527,0.693631,1.20659,0.706068,0.720972,2.19534,0.905636,2.62948,0.54852,0.0786324,0.532872,0.681539,0.242107,0.110993,0.636582,0.495545,0.333618,0.792744,2.598,0.143445,0.500771,0.548334,1.51408,1.07554,0.797601,0.730003,0.535058,1.38871,0.129056,0.340672,0.732731,0.543917,0.0534645,0.161581,0.717305,0.838603,0.603683,0.602672,0.930972,0.660145,0.372438,0.688705,0.67437,0.286453,0.840348,0.243062,0.390066,1.0825,0.172131,2.01901,0.333247,0.621127,0.158673,0.910937,0.572279,0.464505,0.532013,1.13603,0.685116,0.433317,0.723425,1.00525,1.03388,0.821997,0.323373,0.976125,0.456508,1.10385,0.115066,0.300001,0.35497,1.05527,1.88134,1.48237,1.01139,0.475785,0.727736,0.596462,0.354106,0.546641,1.84176,0.816464,1.60254,0.507931,2.49507,0.857198,0.415832,0.455644,0.93735,0.488969,0.57908,0.290467,1.47278,1.06466,0.791909,0.685546,0.284483,0.593295,0.448733,0.160658,0.413167,2.82591
|tfbs_overrepresentation_jaspar=MA0003.1;4.36585,MA0004.1;0.330313,MA0006.1;0.547312,MA0007.1;0.850001,MA0009.1;0.743257,MA0014.1;2.34863,MA0017.1;0.598706,MA0019.1;0.567591,MA0024.1;0.70077,MA0025.1;0.971686,MA0027.1;2.37948,MA0028.1;0.194782,MA0029.1;0.679737,MA0030.1;0.686088,MA0031.1;0.651724,MA0038.1;0.462726,MA0040.1;0.755433,MA0041.1;0.263922,MA0042.1;0.252679,MA0043.1;0.837621,MA0046.1;0.778239,MA0048.1;1.65044,MA0050.1;0.365212,MA0051.1;0.471092,MA0052.1;0.76328,MA0055.1;0.479469,MA0056.1;0,MA0057.1;0.406124,MA0058.1;0.246908,MA0059.1;0.257372,MA0060.1;1.28515,MA0061.1;0.147394,MA0063.1;0,MA0066.1;0.452472,MA0067.1;1.08124,MA0068.1;0.735122,MA0069.1;0.76361,MA0070.1;0.75417,MA0071.1;0.364454,MA0072.1;0.745922,MA0073.1;0.535798,MA0074.1;0.419185,MA0076.1;0.223625,MA0077.1;0.724865,MA0078.1;0.502121,MA0081.1;0.277253,MA0083.1;0.836845,MA0084.1;1.4063,MA0087.1;0.794721,MA0088.1;0.534411,MA0089.1;0,MA0090.1;0.299987,MA0091.1;0.906056,MA0092.1;0.300264,MA0093.1;0.20148,MA0095.1;0,MA0098.1;0,MA0100.1;0.408523,MA0101.1;0.73212,MA0103.1;1.16365,MA0105.1;0.556739,MA0106.1;1.26962,MA0107.1;0.211681,MA0108.2;0.589413,MA0109.1;0,MA0111.1;0.312463,MA0113.1;0.482899,MA0114.1;0.446898,MA0115.1;0.84036,MA0116.1;0.186271,MA0117.1;0.808813,MA0119.1;0.265536,MA0122.1;0.828211,MA0124.1;1.02871,MA0125.1;0.955734,MA0130.1;0,MA0131.1;0.563262,MA0132.1;0,MA0133.1;0,MA0135.1;0.873285,MA0136.1;0.437601,MA0139.1;1.67615,MA0140.1;0.408417,MA0141.1;0.233109,MA0142.1;0.63775,MA0143.1;1.24578,MA0144.1;0.147954,MA0145.1;1.75225,MA0146.1;5.90064,MA0147.1;0.475899,MA0148.1;0.344843,MA0149.1;0.269772,MA0062.2;0.968877,MA0035.2;0.412747,MA0039.2;3.42044,MA0138.2;0.555696,MA0002.2;0.343346,MA0137.2;0.230686,MA0104.2;0.744492,MA0047.2;0.46201,MA0112.2;0.9035,MA0065.2;0.033123,MA0150.1;0.849777,MA0151.1;0,MA0152.1;0.46211,MA0153.1;0.889592,MA0154.1;0.434137,MA0155.1;0.637282,MA0156.1;0.222905,MA0157.1;0.606944,MA0158.1;0,MA0159.1;0.957875,MA0160.1;0.347545,MA0161.1;0,MA0162.1;2.86908,MA0163.1;1.12282,MA0164.1;0.437937,MA0080.2;0.212408,MA0018.2;0.446948,MA0099.2;0.549696,MA0079.2;0.912106,MA0102.2;1.45844,MA0258.1;0.421574,MA0259.1;0.891672,MA0442.1;0
}}

Latest revision as of 15:40, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:62352701..62352755,-p1@Cenpv
Mm9::chr15:36723899..36723909,-p5@Ywhaz
Mm9::chr16:65562883..65562892,-p2@Chmp2b
Mm9::chr17:66132446..66132517,+p2@Ppp4r1
Mm9::chr19:29038382..29038459,+p1@Ppapdc2
Mm9::chr1:174365430..174365443,+p@chr1:174365430..174365443
+
Mm9::chr2:28368763..28368843,+p2@Ralgds
Mm9::chr4:62141059..62141132,+p1@Bspry
Mm9::chr4:95633896..95634011,+p2@Hook1
Mm9::chr5:65928143..65928170,+p6@Ube2k
Mm9::chr7:91838355..91838409,-p2@Zfand6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
intestinal epithelial cell5.06e-079
epithelial cell of alimentary canal5.06e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.36585
MA0004.10.330313
MA0006.10.547312
MA0007.10.850001
MA0009.10.743257
MA0014.12.34863
MA0017.10.598706
MA0019.10.567591
MA0024.10.70077
MA0025.10.971686
MA0027.12.37948
MA0028.10.194782
MA0029.10.679737
MA0030.10.686088
MA0031.10.651724
MA0038.10.462726
MA0040.10.755433
MA0041.10.263922
MA0042.10.252679
MA0043.10.837621
MA0046.10.778239
MA0048.11.65044
MA0050.10.365212
MA0051.10.471092
MA0052.10.76328
MA0055.10.479469
MA0056.10
MA0057.10.406124
MA0058.10.246908
MA0059.10.257372
MA0060.11.28515
MA0061.10.147394
MA0063.10
MA0066.10.452472
MA0067.11.08124
MA0068.10.735122
MA0069.10.76361
MA0070.10.75417
MA0071.10.364454
MA0072.10.745922
MA0073.10.535798
MA0074.10.419185
MA0076.10.223625
MA0077.10.724865
MA0078.10.502121
MA0081.10.277253
MA0083.10.836845
MA0084.11.4063
MA0087.10.794721
MA0088.10.534411
MA0089.10
MA0090.10.299987
MA0091.10.906056
MA0092.10.300264
MA0093.10.20148
MA0095.10
MA0098.10
MA0100.10.408523
MA0101.10.73212
MA0103.11.16365
MA0105.10.556739
MA0106.11.26962
MA0107.10.211681
MA0108.20.589413
MA0109.10
MA0111.10.312463
MA0113.10.482899
MA0114.10.446898
MA0115.10.84036
MA0116.10.186271
MA0117.10.808813
MA0119.10.265536
MA0122.10.828211
MA0124.11.02871
MA0125.10.955734
MA0130.10
MA0131.10.563262
MA0132.10
MA0133.10
MA0135.10.873285
MA0136.10.437601
MA0139.11.67615
MA0140.10.408417
MA0141.10.233109
MA0142.10.63775
MA0143.11.24578
MA0144.10.147954
MA0145.11.75225
MA0146.15.90064
MA0147.10.475899
MA0148.10.344843
MA0149.10.269772
MA0062.20.968877
MA0035.20.412747
MA0039.23.42044
MA0138.20.555696
MA0002.20.343346
MA0137.20.230686
MA0104.20.744492
MA0047.20.46201
MA0112.20.9035
MA0065.20.033123
MA0150.10.849777
MA0151.10
MA0152.10.46211
MA0153.10.889592
MA0154.10.434137
MA0155.10.637282
MA0156.10.222905
MA0157.10.606944
MA0158.10
MA0159.10.957875
MA0160.10.347545
MA0161.10
MA0162.12.86908
MA0163.11.12282
MA0164.10.437937
MA0080.20.212408
MA0018.20.446948
MA0099.20.549696
MA0079.20.912106
MA0102.21.45844
MA0258.10.421574
MA0259.10.891672
MA0442.10
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