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MCL coexpression mm9:715: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004366;glycerol-3-phosphate O-acyltransferase activity;0.0294286461931374;14732!GO:0006644;phospholipid metabolic process;0.0294286461931374;14732,11303!GO:0045332;phospholipid translocation;0.0294286461931374;11303!GO:0006643;membrane lipid metabolic process;0.0294286461931374;14732,11303!GO:0033344;cholesterol efflux;0.0385563249146321;11303!GO:0001945;lymph vessel development;0.0401584375282003;19130!
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|ontology_enrichment_uberon=UBERON:0002107!7.65e-20!22;UBERON:0007499!7.65e-20!22;UBERON:0006925!7.65e-20!22;UBERON:0009497!7.65e-20!22;UBERON:0000015!7.65e-20!22;UBERON:0002423!7.65e-20!22;UBERON:0006235!7.65e-20!22;UBERON:0008835!7.65e-20!22;UBERON:0003894!7.65e-20!22;UBERON:0004161!7.65e-20!22;UBERON:0008836!7.65e-20!22;UBERON:0009854!1.46e-18!23;UBERON:0009856!1.46e-18!23;UBERON:0002365!8.98e-18!25;UBERON:0002330!8.98e-18!25;UBERON:0005172!2.50e-16!49;UBERON:0005173!2.50e-16!49;UBERON:0002417!2.50e-16!49;UBERON:0000916!2.50e-16!49;UBERON:0005177!8.01e-13!79;UBERON:0009569!1.19e-12!66;UBERON:0005256!1.31e-12!45;UBERON:0003104!3.25e-11!61;UBERON:0009142!3.25e-11!61;UBERON:0002100!2.14e-09!90;UBERON:0003914!2.23e-08!47
|tfbs_overrepresentation_for_novel_motifs=0.321524,1.23178,0.807108,0.945937,0.200163,0.373426,0.458558,0.392928,1.32388,1.12691,0.417132,0.447169,0.124608,0.470194,0.214197,0,0.656089,0.19356,0.364803,0.451901,0.26524,0.60924,0.469335,0.198877,0.304728,0.496413,0.107695,0.392919,0.238759,0.271461,0.379806,0.754912,1.06562,0.31333,0.214608,0.6066,0.184038,0.443753,0.166348,0.143746,0.572271,0.38461,0.307718,0.215898,0.434259,0.349801,0.578773,0.407653,1.53869,0.241306,0.639101,0.522137,0.550735,0.894161,0.911367,0.47699,0.249055,0.435119,1.65728,0.47505,0.735292,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.80439,0.155003,0.944464,0.0968968,5.78327,0.313198,0.567793,0.718494,0.74114,0.129727,0.673009,0.529804,0.119727,0.830765,0.318393,0.0697823,0.0791202,0.583509,1.55487,1.11522,0.835661,0.767462,0.205117,0.950022,0.149272,0.122617,0.770215,0.57902,0.234357,0.184103,0.754637,0.87698,0.639679,0.638654,0.3842,0.696857,0.403887,0.273261,0.266818,0.845852,0.878738,0.743427,0.421988,1.12221,0.195318,0.671121,0.363536,0.657356,0.534159,0.949798,0.607824,2.15485,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,0.207624,0.86025,1.66311,1.01535,0.48999,1.14365,12.268,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,2.592,0.385031,0.581788,1.88287,0.882109,0.201635,0.580497,0.0316649,0.895708,0.153911,1.22617,0.976367,0.523103,0.224422,0.319291,2.39257,1.1043,0.829923,0.722546,0.841258,0.629147,1.21106,0.53929,1.13282,0.19482
|tfbs_overrepresentation_jaspar=MA0003.1;0.0214004,MA0004.1;0.360508,MA0006.1;0.210471,MA0007.1;0.346734,MA0009.1;0.780842,MA0014.1;0.342463,MA0017.1;0.658116,MA0019.1;0.603066,MA0024.1;0.737933,MA0025.1;1.01089,MA0027.1;2.42079,MA0028.1;1.83149,MA0029.1;0.716673,MA0030.1;0.723093,MA0031.1;0.688336,MA0038.1;1.24163,MA0040.1;0.79313,MA0041.1;0.291712,MA0042.1;0.279998,MA0043.1;0.875991,MA0046.1;1.90998,MA0048.1;0.509074,MA0050.1;0.396459,MA0051.1;0.504875,MA0052.1;0.801048,MA0055.1;0.0660514,MA0056.1;0,MA0057.1;0.817159,MA0058.1;0.273976,MA0059.1;0.28489,MA0060.1;0.8754,MA0061.1;0.504772,MA0063.1;0,MA0066.1;0.485868,MA0067.1;1.12095,MA0068.1;1.76619,MA0069.1;0.801381,MA0070.1;0.791856,MA0071.1;0.395679,MA0072.1;0.783532,MA0073.1;1.31405,MA0074.1;0.451832,MA0076.1;2.78686,MA0077.1;0.762273,MA0078.1;0.536502,MA0081.1;0.305576,MA0083.1;0.875209,MA0084.1;1.44691,MA0087.1;0.832758,MA0088.1;0.623059,MA0089.1;0,MA0090.1;0.329158,MA0091.1;0.372635,MA0092.1;0.329444,MA0093.1;0.226349,MA0095.1;0,MA0098.1;0,MA0100.1;0.440912,MA0101.1;0.795627,MA0103.1;0.242398,MA0105.1;0.0911942,MA0106.1;0.543967,MA0107.1;0.66744,MA0108.2;0.625209,MA0109.1;0,MA0111.1;0.342068,MA0113.1;0.516916,MA0114.1;0.500166,MA0115.1;0.878749,MA0116.1;1.13868,MA0117.1;0.846964,MA0119.1;1.44977,MA0122.1;0.866511,MA0124.1;1.06819,MA0125.1;0.994853,MA0130.1;0,MA0131.1;0.598671,MA0132.1;0,MA0133.1;0,MA0135.1;0.911905,MA0136.1;0.470672,MA0139.1;0.121562,MA0140.1;0.440804,MA0141.1;0.259554,MA0142.1;0.674191,MA0143.1;0.53259,MA0144.1;0.169559,MA0145.1;0.042251,MA0146.1;0.642452,MA0147.1;0.179496,MA0148.1;0.979954,MA0149.1;0.2978,MA0062.2;2.18244,MA0035.2;1.1319,MA0039.2;0.204978,MA0138.2;1.44221,MA0002.2;2.50251,MA0137.2;0.257017,MA0104.2;0.134457,MA0047.2;0.495607,MA0112.2;0.0422488,MA0065.2;0.665832,MA0150.1;0.346631,MA0151.1;0,MA0152.1;0.495709,MA0153.1;2.13988,MA0154.1;0.862467,MA0155.1;0.0498353,MA0156.1;0.248865,MA0157.1;0.642984,MA0158.1;0,MA0159.1;0.550545,MA0160.1;0.378276,MA0161.1;0,MA0162.1;0.0488928,MA0163.1;0.043065,MA0164.1;0.471016,MA0080.2;0.669221,MA0018.2;0.480226,MA0099.2;0.584892,MA0079.2;0.937792,MA0102.2;1.49914,MA0258.1;0.156336,MA0259.1;0.170828,MA0442.1;0
}}

Latest revision as of 15:46, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:75252977..75252988,-p3@Serpinf2
Mm9::chr18:63851871..63851882,-p8@Txnl1
Mm9::chr19:55201670..55201733,-p2@Gpam
Mm9::chr19:55201737..55201747,-p7@Gpam
Mm9::chr1:191993385..191993405,-p3@Prox1
Mm9::chr4:53156896..53156909,-p@chr4:53156896..53156909
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Mm9::chr4:53156932..53156960,-p@chr4:53156932..53156960
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Mm9::chr4:53156963..53156983,-p@chr4:53156963..53156983
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Mm9::chr9:110892955..110892970,-p@chr9:110892955..110892970
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Mm9::chr9:83148047..83148062,-p@chr9:83148047..83148062
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004366glycerol-3-phosphate O-acyltransferase activity0.0294286461931374
GO:0006644phospholipid metabolic process0.0294286461931374
GO:0045332phospholipid translocation0.0294286461931374
GO:0006643membrane lipid metabolic process0.0294286461931374
GO:0033344cholesterol efflux0.0385563249146321
GO:0001945lymph vessel development0.0401584375282003



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver7.65e-2022
epithelial sac7.65e-2022
digestive gland7.65e-2022
epithelium of foregut-midgut junction7.65e-2022
anatomical boundary7.65e-2022
hepatobiliary system7.65e-2022
foregut-midgut junction7.65e-2022
hepatic diverticulum7.65e-2022
liver primordium7.65e-2022
septum transversum7.65e-2022
liver bud7.65e-2022
digestive tract diverticulum1.46e-1823
sac1.46e-1823
exocrine gland8.98e-1825
exocrine system8.98e-1825
abdomen element2.50e-1649
abdominal segment element2.50e-1649
abdominal segment of trunk2.50e-1649
abdomen2.50e-1649
trunk region element8.01e-1379
subdivision of trunk1.19e-1266
trunk mesenchyme1.31e-1245
mesenchyme3.25e-1161
entire embryonic mesenchyme3.25e-1161
trunk2.14e-0990
epithelial tube2.23e-0847


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0214004
MA0004.10.360508
MA0006.10.210471
MA0007.10.346734
MA0009.10.780842
MA0014.10.342463
MA0017.10.658116
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.11.83149
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.11.24163
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.11.90998
MA0048.10.509074
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.0660514
MA0056.10
MA0057.10.817159
MA0058.10.273976
MA0059.10.28489
MA0060.10.8754
MA0061.10.504772
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.11.76619
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.11.31405
MA0074.10.451832
MA0076.12.78686
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.623059
MA0089.10
MA0090.10.329158
MA0091.10.372635
MA0092.10.329444
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.795627
MA0103.10.242398
MA0105.10.0911942
MA0106.10.543967
MA0107.10.66744
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.10.500166
MA0115.10.878749
MA0116.11.13868
MA0117.10.846964
MA0119.11.44977
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.10.121562
MA0140.10.440804
MA0141.10.259554
MA0142.10.674191
MA0143.10.53259
MA0144.10.169559
MA0145.10.042251
MA0146.10.642452
MA0147.10.179496
MA0148.10.979954
MA0149.10.2978
MA0062.22.18244
MA0035.21.1319
MA0039.20.204978
MA0138.21.44221
MA0002.22.50251
MA0137.20.257017
MA0104.20.134457
MA0047.20.495607
MA0112.20.0422488
MA0065.20.665832
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.12.13988
MA0154.10.862467
MA0155.10.0498353
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.10.550545
MA0160.10.378276
MA0161.10
MA0162.10.0488928
MA0163.10.043065
MA0164.10.471016
MA0080.20.669221
MA0018.20.480226
MA0099.20.584892
MA0079.20.937792
MA0102.21.49914
MA0258.10.156336
MA0259.10.170828
MA0442.10
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