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MCL coexpression mm9:2493: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000991!2.25e-08!18;UBERON:0005564!2.25e-08!18;UBERON:0003133!6.21e-08!24;UBERON:0003135!7.27e-08!15;UBERON:0004176!8.22e-08!17;UBERON:0009196!8.22e-08!17;UBERON:0009117!8.22e-08!17;UBERON:0000473!1.47e-07!14;UBERON:0005156!2.01e-07!26;UBERON:0000990!2.01e-07!26;UBERON:0000926!3.44e-07!120;UBERON:0004120!3.44e-07!120;UBERON:0006603!3.44e-07!120;UBERON:0010314!5.71e-07!92;UBERON:0003101!9.53e-07!16;UBERON:0000079!9.53e-07!16
}}

Latest revision as of 18:37, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr9:40263704..40263718,-p9@Gramd1b
Mm9::chr9:40263722..40263733,-p18@Gramd1b
Mm9::chr9:40263737..40263761,-p3@Gramd1b
Mm9::chr9:40263780..40263809,-p1@Gramd1b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0356887
MA0004.10.6888
MA0006.11.24418
MA0007.10.672186
MA0009.11.15569
MA0014.10.0809287
MA0017.10.528196
MA0019.10.964875
MA0024.11.11019
MA0025.11.39562
MA0027.12.81824
MA0028.10.509589
MA0029.11.08753
MA0030.11.09438
MA0031.11.05719
MA0038.10.846479
MA0040.11.16866
MA0041.10.604221
MA0042.10.589368
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MA0079.22.24437
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MA0442.10