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{{DOID
{{DOID
|id=DOID:0060072
|alt_id=
|name=benign neoplasm
|namespace=disease_ontology
|def="A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize." [url:http://en.wikipedia.org/wiki/Benign_neoplasm, url:http://www.nlm.nih.gov/medlineplus/benigntumors.html]
|xref=
|is_a=DOID:14566
|synonym=
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|disjoint_from=
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|created_by=lschriml
|created_by=lschriml
|obo_creation_date=2011-05-11T12:18:41Z
|def="A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize." [url:http://en.wikipedia.org/wiki/Benign_neoplasm, url:http://www.nlm.nih.gov/medlineplus/benigntumors.html]
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|obo_creation_date=2011-05-11T12:18:41Z
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
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Revision as of 10:32, 12 September 2014

Name:benign neoplasm
Namespace:disease_ontology
Definition:"A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize." [url:http://en.wikipedia.org/wiki/Benign_neoplasm, url:http://www.nlm.nih.gov/medlineplus/benigntumors.html]
Created by:lschriml
Creation date:2011-05-11T12:18:41Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:14566(disease of cellular proliferation)



Children


is a:DOID:0060084 (cell type benign neoplasm),DOID:0060085 (organ system benign neoplasm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060072 (benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.3e-110FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_c39d2dd1691e0d9b7263078efdce1e19p1@uc003epl.2
1.3e-110FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_c39d2dd1691e0d9b7263078efdce1e19p1@uc003epl.2
1.55e-98FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_2963d3417c37fe76d19e6afebd5c3d16p@chr1:152842532..152842539, +
1.55e-98FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_2963d3417c37fe76d19e6afebd5c3d16p@chr1:152842546..152842554, +
1.55e-98FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_2963d3417c37fe76d19e6afebd5c3d16p@chr1:152842532..152842539, +
1.55e-98FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_2963d3417c37fe76d19e6afebd5c3d16p@chr1:152842546..152842554, +
4.23e-89FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_405531e637a3984b0ea72a3dc9b730f0p2@ENST00000505721
4.23e-89FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_405531e637a3984b0ea72a3dc9b730f0p2@ENST00000505721
5.72e-89FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_aa88f41b6018d70f6f05997fbe99bb34p@chr2:218192886..218192899, -
5.72e-89FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_aa88f41b6018d70f6f05997fbe99bb34p@chr2:218192886..218192899, -
4.98e-64FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_69a89dd59de4051d8a484d28be7e78fcp@chr8:42037558..42037573, -
4.98e-64FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_69a89dd59de4051d8a484d28be7e78fcp@chr8:42037558..42037573, -
9.51e-64FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_5080e994c2906e19e648cfc7f14046c8p60@ZBTB38
9.51e-64FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_5080e994c2906e19e648cfc7f14046c8p60@ZBTB38
3.1e-50FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_a0a5c2f3f6a2c14c3cd954548533ed1fp@chr2:218192853..218192858, -
3.1e-50FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_a0a5c2f3f6a2c14c3cd954548533ed1fp1@CU687665
3.1e-50FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_a0a5c2f3f6a2c14c3cd954548533ed1fp@chr11:101742272..101742276, -
3.1e-50FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_a0a5c2f3f6a2c14c3cd954548533ed1fp@chr2:218192853..218192858, -
3.1e-50FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_a0a5c2f3f6a2c14c3cd954548533ed1fp1@CU687665
3.1e-50FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_a0a5c2f3f6a2c14c3cd954548533ed1fp@chr11:101742272..101742276, -
6.6e-50FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_73af4443891c0f19e1b638cb9986e9ffp@chr1:163045452..163045464, +
6.6e-50FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_73af4443891c0f19e1b638cb9986e9ffp@chr1:163045452..163045464, +
1.69e-45FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_8345ca057945be74cb23ba97de0c2ac0p3@KIAA1644
1.69e-45FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_8345ca057945be74cb23ba97de0c2ac0p3@KIAA1644
1.46e-41FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_9bb6ba6118a8f7d2c4bb75ffad70da9cp9@ADAM23
1.46e-41FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_9bb6ba6118a8f7d2c4bb75ffad70da9cp9@ADAM23
5.02e-41FFCP PHASE1:Hg19::chr13:32313732..32313747,+#_b69560c9a1beb06436ef986e70f2f955p1@RXFP2
5.02e-41FFCP PHASE2:Hg19::chr13:32313732..32313747,+#_b69560c9a1beb06436ef986e70f2f955p1@RXFP2
3.77e-35FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_3e052d1d4aa660feb8a7475df39ffbb0p10@PLAT
3.77e-35FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_3e052d1d4aa660feb8a7475df39ffbb0p10@PLAT
7.07e-34FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_6720531860a971e455df9305811f3641p@chr7:12134329..12134354, -
7.07e-34FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_6720531860a971e455df9305811f3641p@chr2:218193183..218193196, -
7.07e-34FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_6720531860a971e455df9305811f3641p@chr7:12134329..12134354, -
7.07e-34FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_6720531860a971e455df9305811f3641p@chr2:218193183..218193196, -
4.01e-33FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_b43249ffef0d6ceb00ebe79be7a39b44p@chr6:86200265..86200276, +
4.01e-33FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_b43249ffef0d6ceb00ebe79be7a39b44p@chr6:86200265..86200276, +
2.74e-29FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_aaef8f291372e9d2bde3c5a8242b66ffp18@STS
2.74e-29FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_aaef8f291372e9d2bde3c5a8242b66ffp18@STS
1.55e-27FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_c60c2cdc147ffb4386dd17ca418dd7c7p@chr6:86204236..86204247, +
1.55e-27FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_c60c2cdc147ffb4386dd17ca418dd7c7p@chr6:86204236..86204247, +
2.21e-27FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_0125e446b10d4279ccd02a1ec99458f5p@chr1:198203826..198203841, +
2.21e-27FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_0125e446b10d4279ccd02a1ec99458f5p@chr1:198203826..198203841, +
5.56e-26FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_37861dcc5d3d22ef14130d6368183cdbp@chr5:14034644..14034647, -
5.56e-26FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_37861dcc5d3d22ef14130d6368183cdbp@chr18:71197490..71197495, -
5.56e-26FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_37861dcc5d3d22ef14130d6368183cdbp@chr16:51670868..51670880, -
5.56e-26FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_37861dcc5d3d22ef14130d6368183cdbp@chr11:81551043..81551054, -
5.56e-26FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_37861dcc5d3d22ef14130d6368183cdbp@chr5:14034644..14034647, -
5.56e-26FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_37861dcc5d3d22ef14130d6368183cdbp@chr16:51670868..51670880, -
5.56e-26FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_37861dcc5d3d22ef14130d6368183cdbp@chr18:71197490..71197495, -
5.56e-26FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_37861dcc5d3d22ef14130d6368183cdbp@chr11:81551043..81551054, -
7.14e-26FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_362a8179f88afbf67580ca68c0f0f92cp1@ENST00000504993
7.14e-26FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_362a8179f88afbf67580ca68c0f0f92cp@chr3:106393655..106393659, +
7.14e-26FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_362a8179f88afbf67580ca68c0f0f92cp53@FAT1
7.14e-26FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_362a8179f88afbf67580ca68c0f0f92cp@chr4:34480309..34480321, -
7.14e-26FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_362a8179f88afbf67580ca68c0f0f92cp13@MAST2
7.14e-26FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_362a8179f88afbf67580ca68c0f0f92cp@chr11:102712977..102712984, -
7.14e-26FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_362a8179f88afbf67580ca68c0f0f92cp@chr3:45174403..45174415, +
7.14e-26FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_362a8179f88afbf67580ca68c0f0f92cp@chr7:12134356..12134370, -
7.14e-26FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_362a8179f88afbf67580ca68c0f0f92cp@chr3:132975822..132975848, -
7.14e-26FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_362a8179f88afbf67580ca68c0f0f92cp@chr6:130763941..130763951, +
7.14e-26FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_362a8179f88afbf67580ca68c0f0f92cp@chr5:23952305..23952310, +
7.14e-26FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_362a8179f88afbf67580ca68c0f0f92cp53@FAT1
7.14e-26FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_362a8179f88afbf67580ca68c0f0f92cp@chr3:106393655..106393659, +
7.14e-26FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_362a8179f88afbf67580ca68c0f0f92cp1@ENST00000504993
7.14e-26FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_362a8179f88afbf67580ca68c0f0f92cp13@MAST2
7.14e-26FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_362a8179f88afbf67580ca68c0f0f92cp@chr7:12134356..12134370, -
7.14e-26FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_362a8179f88afbf67580ca68c0f0f92cp@chr3:45174403..45174415, +
7.14e-26FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_362a8179f88afbf67580ca68c0f0f92cp@chr4:34480309..34480321, -
7.14e-26FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_362a8179f88afbf67580ca68c0f0f92cp@chr3:132975822..132975848, -
7.14e-26FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_362a8179f88afbf67580ca68c0f0f92cp@chr11:102712977..102712984, -
7.14e-26FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_362a8179f88afbf67580ca68c0f0f92cp@chr6:130763941..130763951, +
7.14e-26FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_362a8179f88afbf67580ca68c0f0f92cp@chr5:23952305..23952310, +
7.64e-26FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_a3bd1eec7b201e8cca1a3352698bdb16p2@RXFP2
7.64e-26FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_a3bd1eec7b201e8cca1a3352698bdb16p2@RXFP2
1.26e-25FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_f1c786646951885e68361f5773c077b4p3@RXFP2
1.26e-25FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_f1c786646951885e68361f5773c077b4p3@RXFP2
8.64e-25FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_7b7d6c8040ca2c1a2338df168eb96240p@chr21:30000326..30000330, +
8.64e-25FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_7b7d6c8040ca2c1a2338df168eb96240p@chr21:30000326..30000330, +
1.92e-24FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_61f8738c96ae74b4189fa67b0fee5ab1p1@AB385516
1.92e-24FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_61f8738c96ae74b4189fa67b0fee5ab1p1@AB385516
6.91e-24FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_43835f2f6011d728bdfaa74122a720cfp9@PLAT
6.91e-24FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_43835f2f6011d728bdfaa74122a720cfp9@PLAT
2.53e-23FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_93d8ba6bc2b80089b74182d6ca25b4d8p10@SPEG
2.53e-23FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_93d8ba6bc2b80089b74182d6ca25b4d8p10@SPEG
3.17e-23FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_b30c84c64e3372c14ce3b4bfe9dac14ep4@ENST00000470747
3.17e-23FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_b30c84c64e3372c14ce3b4bfe9dac14ep4@ENST00000470747
3.68e-23FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_c7d6cb5728f7c89d774dffc336731e00p@chr8:42033253..42033264, -
3.68e-23FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_c7d6cb5728f7c89d774dffc336731e00p@chr8:42033253..42033264, -
4.11e-23FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_15c365d0b6af6a2d74b31fba455f2361p51@ZBTB38
4.11e-23FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_15c365d0b6af6a2d74b31fba455f2361p51@ZBTB38
6.42e-23FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_6dc6ac00c80110b13c6efd9ba3d2aafdp@chr10:90974443..90974454, -
6.42e-23FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_6dc6ac00c80110b13c6efd9ba3d2aafdp@chr10:90974443..90974454, -
1.57e-22FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_3bf1058f07f749a4d14e0fc6579e9988p@chr7:84349931..84349955, -
1.57e-22FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_3bf1058f07f749a4d14e0fc6579e9988p@chr7:84349931..84349955, -
2.79e-22FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_380a27b7b6ee26977f52dea9ab46b27dp@chr9:106854088..106854104, -
2.79e-22FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_380a27b7b6ee26977f52dea9ab46b27dp@chr9:106854088..106854104, -
7.12e-22FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_ea955d15afe396e5533761aeaf433edbp39@DCBLD2
7.12e-22FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_ea955d15afe396e5533761aeaf433edbp@chr10:90988088..90988122, -
7.12e-22FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_ea955d15afe396e5533761aeaf433edbp@chr10:90988088..90988122, -
7.12e-22FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_ea955d15afe396e5533761aeaf433edbp39@DCBLD2

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