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{{DOID
{{DOID
|id=DOID:3095
|alt_id=
|name=germ cell and embryonal cancer
|namespace=disease_ontology
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
|xref=MSH:D009373;;UMLS_CUI:C0027658
|is_a=DOID:2994
|synonym="germ cell and embryonal neoplasm" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3095
|is_a=DOID:2994
|is_obsolete=
|located_in=
|located_in=
|name=germ cell and embryonal cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="germ cell and embryonal neoplasm" RELATED []
|union_of=
|xref=MSH:D009373;;UMLS_CUI:C0027658
}}
}}

Revision as of 10:34, 12 September 2014

Name:germ cell and embryonal cancer
Namespace:disease_ontology
Definition:"A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
Xrefs:
links:

MSH:D009373

UMLS_CUI:C0027658
Synonyms: "germ cell and embryonal neoplasm" RELATED []

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:2994(germ cell cancer)



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.32e-71FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2p@chr2:218875465..218875482, -
2.32e-71FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2p@chr2:218875465..218875482, -
7.16e-55FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80p3@DPPA3
7.16e-55FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80p3@DPPA3
6.24e-54FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810p19@KIAA1456
6.24e-54FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810p19@KIAA1456
5.21e-52FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81dp2@DPPA3
5.21e-52FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81dp2@DPPA3
2.88e-46FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cfp3@TRIM60
2.88e-46FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cfp3@TRIM60
3.12e-46FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7p2@ENST00000417339
3.12e-46FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7p2@ENST00000417339
3.12e-46FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7p@chr3:5932149..5932178, +
3.12e-46FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7p@chr3:5932149..5932178, +
3.37e-46FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83p4@DNMT3L
3.37e-46FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83p4@DNMT3L
3.37e-46FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83p@chr20:4228201..4228214, +
3.65e-46FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6p@chr20:4228155..4228166, +
3.65e-46FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6p@chr20:4228155..4228166, +
3.65e-46FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6p@chr9:15883095..15883109, +
3.95e-46FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4p@chr9:15883050..15883085, +
3.95e-46FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4p@chr9:15883050..15883085, +
3.09e-45FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8p@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8p22@FCGRT
3.09e-45FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8p@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8p@chr3:8407443..8407453, -
3.09e-45FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8p22@FCGRT
3.09e-45FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8p@chr3:8407443..8407453, -
3.09e-45FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8p@chr1:155804376..155804383, -
3.09e-45FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8p@chr5:133764015..133764029, +
3.09e-45FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8p46@DLG2
3.09e-45FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8p@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8p@chr1:155804376..155804383, -
3.09e-45FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8p2@A2ML1-AS1
3.09e-45FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8p@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8p@chr1:27385778..27385789, +
3.09e-45FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8p2@A2ML1-AS1
3.09e-45FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8p@chr1:27385778..27385789, +
3.09e-45FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8p@chr2:218876066..218876078, -
3.09e-45FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8p@chr11:18665025..18665064, +
3.09e-45FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8p@chr2:218876066..218876078, -
3.09e-45FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8p46@DLG2
6.61e-44FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6p2@DNMT3L
6.61e-44FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6p2@DNMT3L
1.63e-40FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897p16@KIAA1456
1.63e-40FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897p16@KIAA1456
1.87e-40FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5ap@chr2:230804505..230804520, -
1.87e-40FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5ap@chr2:230804505..230804520, -
5.93e-40FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaeap1@DNMT3L
5.93e-40FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaeap1@DNMT3L
7.05e-38FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899p@chr2:207068264..207068271, +
7.05e-38FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899p@chr2:207068264..207068271, +
8.52e-38FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6p3@GPR64
8.52e-38FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6p3@GPR64
9.2e-38FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24p1@TRIM60
9.2e-38FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24p1@ENST00000417485
9.2e-38FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24p1@ENST00000417485
9.2e-38FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24p@chr19:49714057..49714062, +
9.92e-38FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdbp2@TRIM60
9.92e-38FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdbp2@TRIM60
1.07e-37FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:99982282..99982305, +
1.07e-37FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:9895464..9895477, -
1.07e-37FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:9895464..9895477, -
1.07e-37FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr9:15883133..15883144, +
1.07e-37FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr9:15883133..15883144, +
1.07e-37FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8cep@chr3:99982282..99982305, +
1.16e-37FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5p1@ENST00000510640
1.16e-37FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5p1@ENST00000510640
1.49e-36FFCP PHASE2:Hg19::chr7:123674206..123674214,-#_299b237c91a58560df578a261ec29545p@chr7:123674206..123674214, -
1.49e-36FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_299b237c91a58560df578a261ec29545p@chr19:40431284..40431296, -
1.49e-36FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_299b237c91a58560df578a261ec29545p6@CNR2
1.49e-36FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_299b237c91a58560df578a261ec29545p5@LRRC6
1.49e-36FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_299b237c91a58560df578a261ec29545p@chr21:27478934..27478945, -
1.49e-36FFCP PHASE2:Hg19::chr8:27041862..27041872,+#_299b237c91a58560df578a261ec29545p1@ENST00000521408
1.49e-36FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_299b237c91a58560df578a261ec29545p@chr1:227034858..227034868, +
1.49e-36FFCP PHASE1:Hg19::chr7:123674206..123674214,-#_299b237c91a58560df578a261ec29545p@chr7:123674206..123674214, -
1.49e-36FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_299b237c91a58560df578a261ec29545p@chr6:6032547..6032560, -
1.49e-36FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_299b237c91a58560df578a261ec29545p@chr12:32717031..32717041, +
1.49e-36FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_299b237c91a58560df578a261ec29545p@chr1:227034858..227034868, +
1.49e-36FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_299b237c91a58560df578a261ec29545p@chr19:40431284..40431296, -

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