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{{UBERON
{{UBERON
|id=UBERON:0000055
|alt_id=
|name=vessel
|namespace=
|def="A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm]
|xref=
|is_a=UBERON:0004111
|synonym=
|comment=compare with UBERON:0008782
|comment=compare with UBERON:0008782
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000055
|is_a=UBERON:0004111
|is_obsolete=
|located_in=
|located_in=
|name=vessel
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:50, 12 September 2014

Name:vessel
Definition:"A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm]
Comments:compare with UBERON:0008782
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004111(anatomical conduit)



Children

is a:UBERON:0001473 (lymphatic vessel),UBERON:0001981 (blood vessel),UBERON:0005985 (coronary vessel),UBERON:0010523 (microcirculatory vessel),FF:10727-110A7 (lymphangiectasia cell line:DS-1)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000055 (vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.16e-106FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_b6911b2cf82d2c3d2d7150c24050886bp2@SOX17
6.16e-106FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_b6911b2cf82d2c3d2d7150c24050886bp2@SOX17
3.3e-99FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_5389fc50cfc899abf9212e9f300f9c86p@chr12:96830430..96830450, +
3.3e-99FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_5389fc50cfc899abf9212e9f300f9c86p@chr12:96830430..96830450, +
1.55e-77FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_97b3c738348d51c3252dd783bec5eb8ap@chr1:186946626..186946652, +
1.55e-77FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_97b3c738348d51c3252dd783bec5eb8ap@chr1:186946626..186946652, +
3.41e-77FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_cfb948ecf5cc22a01cb916c05ba7f6a4p@chr3:30334038..30334060, +
3.41e-77FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_cfb948ecf5cc22a01cb916c05ba7f6a4p@chr3:30334038..30334060, +
1.09e-75FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_eadd97b43ca0441c3bfb8011fb9c2528p10@ECE1
1.09e-75FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_eadd97b43ca0441c3bfb8011fb9c2528p10@ECE1
9.71e-75FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_9e11c27c76a33b462ff5c61c96dcc02ap2@ESM1
9.71e-75FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_9e11c27c76a33b462ff5c61c96dcc02ap2@ESM1
1.05e-74FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3f847ba591f4776f10a6867cbb0180cdp@chr10:4823096..4823144, -
1.05e-74FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3f847ba591f4776f10a6867cbb0180cdp@chr10:4823096..4823144, -
3.82e-70FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_57be5dc1fa1d97a1aac993fd21084baep8@HHIP
3.82e-70FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_57be5dc1fa1d97a1aac993fd21084baep8@HHIP
5.4e-70FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_f73763bd32336075e394ce95f0d1149bp10@HHIP
5.4e-70FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_f73763bd32336075e394ce95f0d1149bp10@HHIP
1.65e-69FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_2d4c68dae1522df7f642a7aaa29f213ep6@Npy1r
1.65e-69FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_2d4c68dae1522df7f642a7aaa29f213ep6@Npy1r
2.92e-67FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_93eb8dd4124228d17ee080d8fbca1f59p4@SULT1B1
2.92e-67FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_93eb8dd4124228d17ee080d8fbca1f59p4@SULT1B1
2.14e-66FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_4bae80c30bed24db523eab1211b148fcp4@ESM1
2.14e-66FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_4bae80c30bed24db523eab1211b148fcp4@ESM1
3.26e-66FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_e0d9c981f18bef5b0aeeadc62c6b2429p6@HHIP
3.26e-66FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_e0d9c981f18bef5b0aeeadc62c6b2429p6@HHIP
7.72e-65FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_c8186a97b1b4ca53f711ceaa706213e3p@chr12:105863636..105863650, +
7.72e-65FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_c8186a97b1b4ca53f711ceaa706213e3p@chr12:105863636..105863650, +
1.17e-64FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_31a3bc0e139770a02f8407099e6cf852p@chr4:86700590..86700615, +
1.17e-64FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_31a3bc0e139770a02f8407099e6cf852p@chr4:86700590..86700615, +
5.08e-63FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_36ce96d3f6bff385d0396af42d1a57a3p1@ENST00000439823
5.08e-63FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_36ce96d3f6bff385d0396af42d1a57a3p1@ENST00000439823
1.37e-62FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_b0cd51159aa57bede0dcd33536d205edp4@HHIP
1.37e-62FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_b0cd51159aa57bede0dcd33536d205edp4@HHIP
2.83e-62FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_4d922be1c855ffacff1f718983025840p5@HHIP
2.83e-62FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_4d922be1c855ffacff1f718983025840p5@HHIP
3.19e-62FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_48f49c7de0f1355fb61aa2a7b47bddeap3@SULT1B1
3.19e-62FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_48f49c7de0f1355fb61aa2a7b47bddeap3@SULT1B1
3.45e-61FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_390abea0edbc7f8539a8e8264fa4c153p@chr11:86649508..86649546, -
3.45e-61FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_390abea0edbc7f8539a8e8264fa4c153p@chr11:86649508..86649546, -
3.83e-61FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_1235459fb0106eb1a22c4f4333a18386p@chr15:39423060..39423066, +
3.83e-61FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_1235459fb0106eb1a22c4f4333a18386p@chr15:39423060..39423066, +
7.04e-61FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_087e3705a6995a5030380684e42b217fp@chr22:21138343..21138378, +
7.04e-61FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_087e3705a6995a5030380684e42b217fp@chr22:21138343..21138378, +
1.05e-60FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_7f8142887aed8b91ab59f122b9dea643p@chr11:128562673..128562716, -
1.05e-60FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_7f8142887aed8b91ab59f122b9dea643p@chr11:128562673..128562716, -
1.2e-60FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_f5d71908b67d085f831ed6554e8b88d9p7@HHIP
1.2e-60FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_f5d71908b67d085f831ed6554e8b88d9p7@HHIP
5.81e-60FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_28dd547eca8f9166992d752e5608e3f2p@chr12:105863654..105863682, +
5.81e-60FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_28dd547eca8f9166992d752e5608e3f2p@chr12:105863654..105863682, +
5.59e-59FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_0945970dd7ed06138c68ff866e2c51d9p2@RHOJ
5.59e-59FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_0945970dd7ed06138c68ff866e2c51d9p2@RHOJ
9.44e-58FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_17016c51f25d33ca474853735e3d6e34p@chr11:102667477..102667490, -
9.44e-58FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_17016c51f25d33ca474853735e3d6e34p@chr11:102667477..102667490, -
1.25e-57FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_ef74040e7cfc4d53c66c292a1b5785f1p4@MMP1
1.25e-57FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_ef74040e7cfc4d53c66c292a1b5785f1p4@MMP1
7.55e-57FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_7bf5f9ddaeed5cc4c5b5104812814a2cp1@MIR216A
7.55e-57FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_7bf5f9ddaeed5cc4c5b5104812814a2cp1@MIR216A
2.83e-56FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_a2f0acef94903e9c8fcec71e08245948p@chr11:128563283..128563297, -
2.83e-56FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_a2f0acef94903e9c8fcec71e08245948p@chr11:128563283..128563297, -
3.62e-56FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_28ff0e58c8faf9dc7aae5b2064dd605cp3@MMP1
3.62e-56FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_28ff0e58c8faf9dc7aae5b2064dd605cp3@MMP1
4.2e-56FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_a9dddc4fd82b4215aa53c3d02dceb0fep5@Npy1r
4.2e-56FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_a9dddc4fd82b4215aa53c3d02dceb0fep4@Il6st
4.2e-56FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_a9dddc4fd82b4215aa53c3d02dceb0fep5@Npy1r
4.2e-56FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_a9dddc4fd82b4215aa53c3d02dceb0fep4@Il6st
1.11e-55FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_6e9a81bb8fcb60c6e9eedd0159034729p@chr2:65009852..65009866, -
1.11e-55FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_6e9a81bb8fcb60c6e9eedd0159034729p@chr2:65009852..65009866, -
1.22e-55FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_9c956950fca3e26055eaa541d8a5b347p@chr6:3753188..3753192, -
1.22e-55FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_9c956950fca3e26055eaa541d8a5b347p@chr6:3753188..3753192, -
2.29e-55FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_62392b05d277bc46c58e4ef3b3e8e985p3@ARAP3
2.29e-55FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_62392b05d277bc46c58e4ef3b3e8e985p3@ARAP3
5.64e-55FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_8fd1e9bb405782f4aafafdfc346e2e34p1@C15orf54
5.64e-55FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_8fd1e9bb405782f4aafafdfc346e2e34p1@C15orf54
1.51e-54FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_149f2d45321aeaac53815afd01ca86d1p2@MOV10L1
1.51e-54FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_149f2d45321aeaac53815afd01ca86d1p2@MOV10L1
2.76e-54FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_d17e77776e7e5d71881855bd8efcc8ddp@chr11:124761247..124761258, -
2.76e-54FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_d17e77776e7e5d71881855bd8efcc8ddp@chr11:124761247..124761258, -
3.95e-54FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_84b603971fbf7372572d77ebc657cf30p@chr11:102662162..102662217, -
3.95e-54FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_84b603971fbf7372572d77ebc657cf30p@chr11:102662162..102662217, -
4.47e-54FFCP PHASE1:Hg19::chr2:202563351..202563376,-#_3451a0846231749ce8fae1506e437d40p1@MPP4
4.47e-54FFCP PHASE2:Hg19::chr2:202563351..202563376,-#_3451a0846231749ce8fae1506e437d40p1@MPP4
1.54e-53FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_bcce46dd58e5dd9c5b2c52e6db286e50p9@HHIP
1.54e-53FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_bcce46dd58e5dd9c5b2c52e6db286e50p9@HHIP
1.66e-53FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_af23a57aa0c6f2153ce85bb2085c7b20p@chr22:21138313..21138336, +
1.66e-53FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_af23a57aa0c6f2153ce85bb2085c7b20p@chr22:21138313..21138336, +
2.05e-53FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_5391e13cb531c5ef80142065e9f6de32p24@WWTR1
2.05e-53FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_5391e13cb531c5ef80142065e9f6de32p24@WWTR1
3.99e-53FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_e0b1d4073af4852f4d735abc4c0a292fp@chr11:102668178..102668206, +
3.99e-53FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_e0b1d4073af4852f4d735abc4c0a292fp@chr11:102668178..102668206, +
4.37e-53FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_d8e135e4f6e9ca1f4d41390048b85f07p@chr18:33046982..33046991, -
4.37e-53FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_d8e135e4f6e9ca1f4d41390048b85f07p@chr18:33046982..33046991, -
1.15e-52FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_83db9083046e67f5317d674763ddf21ap2@BMX
1.15e-52FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_83db9083046e67f5317d674763ddf21ap2@BMX
1.64e-52FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_56dc5136c01d1187bd6b579b2accc94fp@chr8:69228447..69228492, +
1.64e-52FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_56dc5136c01d1187bd6b579b2accc94fp@chr2:112043522..112043530, -
1.64e-52FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_56dc5136c01d1187bd6b579b2accc94fp@chrX:160839744..160839754, +
1.64e-52FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_56dc5136c01d1187bd6b579b2accc94fp@chr17:87574327..87574332, +
1.64e-52FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_56dc5136c01d1187bd6b579b2accc94fp@chr17:14827154..14827169, -
1.64e-52FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_56dc5136c01d1187bd6b579b2accc94fp@chr2:178190171..178190178, +

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