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UBERON:0004111

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Name:anatomical conduit
Namespace:FANTOM
Definition:"any opening in the body." [Wikipedia:Foramen]
Xrefs:
links:

AEO:0000080
EHDAA2:0003080

FMA:242873
Synonyms: "foramen" NARROW [EHDAA2:0003080]
"foramina" NARROW PLURAL [UBERON:cjm]
Comments:note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster)



Children

is a:UBERON:0000025 (tube),UBERON:0000055 (vessel),UBERON:0000161 (orifice),UBERON:0004145 (outflow tract),UBERON:0005744 (cranial conduit),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004111 (anatomical conduit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.09e-50FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827fp1@GPR4, p2@OPA3
3.09e-50FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_ed5ff2636c4eab5470fa3e8b5c96827fp1@GPR4, p2@OPA3
5.17e-48FFCP PHASE2:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baecp@chr19:46477244..46477302, -
5.17e-48FFCP PHASE1:Hg19::chr19:46477244..46477302,-#_05f78df3b012be334bd24e07b927baecp@chr19:46477244..46477302, -
5.21e-46FFCP PHASE1:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32p4@EPB49
5.21e-46FFCP PHASE2:Hg19::chr8:21924000..21924036,+#_1199714092d974118d44efecafca5b32p4@EPB49
2.81e-45FFCP PHASE1:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafap1@CDH5
2.81e-45FFCP PHASE2:Hg19::chr16:66400578..66400600,+#_10baab36c76a223c0df886cd0f8bcafap1@CDH5
2.66e-43FFCP PHASE1:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285p1@MYCT1
2.66e-43FFCP PHASE2:Hg19::chr6:153019069..153019091,+#_e2c7220dbe2e7259e077a6ad246ea285p1@MYCT1
5.18e-43FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9p1@HHIP
5.18e-43FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_e8e02ec33af54d6ec4046e8cbebebff9p1@HHIP
1.35e-42FFCP PHASE1:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081p2@TEK
1.35e-42FFCP PHASE2:Hg19::chr9:27109440..27109456,+#_fda010b641609cabe5623d08c06a3081p2@TEK
3.14e-42FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41p1@FAM171A1
3.14e-42FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_9afee04b520343e6aaa599ad081cbe41p1@FAM171A1
3.34e-41FFCP PHASE1:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9cp3@RIN2
3.34e-41FFCP PHASE2:Hg19::chr20:19867269..19867283,+#_51e7c84c11471aa9631639e60e89bd9cp3@RIN2
3.63e-41FFCP PHASE1:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83ap1@GPRC5B
3.63e-41FFCP PHASE2:Hg19::chr16:19896150..19896205,-#_84ced748cb0f4f2e7065f2dca9c6c83ap1@GPRC5B
3.97e-40FFCP PHASE2:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02p@chr4:145662551..145662554, +
3.97e-40FFCP PHASE1:Hg19::chr4:145662551..145662554,+#_d4296f98a90c9b75cfecfbe0d076cd02p@chr4:145662551..145662554, +
7.24e-40FFCP PHASE2:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161bp1@CGNL1
7.24e-40FFCP PHASE1:Hg19::chr15:57668695..57668734,+#_89930225c38600dc3931b5c4e675161bp1@CGNL1
2.94e-39FFCP PHASE1:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223bp1@NOVA2
2.94e-39FFCP PHASE2:Hg19::chr19:46476791..46476819,-#_df9c5e9cbf8457eeda06590f09d6223bp1@NOVA2
9.58e-39FFCP PHASE1:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4fp1@TEK
9.58e-39FFCP PHASE2:Hg19::chr9:27109392..27109435,+#_2cb8a62766046b48d54d9ef0d6b6de4fp1@TEK
1.54e-38FFCP PHASE2:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5p1@MMRN2
1.54e-38FFCP PHASE1:Hg19::chr10:88717337..88717379,-#_fe7321e68023af1a891e3a6a99f5e7b5p1@MMRN2
8.78e-38FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256p1@SOX17
8.78e-38FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_cbfdb866be84c034fd411b28c0c45256p1@SOX17
9.28e-38FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144p2@NFIB
9.28e-38FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_b74afbafeeab0595d24f741b9ebab144p2@NFIB
1.14e-37FFCP PHASE1:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28cp2@HYAL2
1.14e-37FFCP PHASE2:Hg19::chr3:50360165..50360183,-#_a7db41e27cf392b602eeb0f7cf1de28cp2@HYAL2
1.2e-37FFCP PHASE1:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416bp6@EPB49
1.2e-37FFCP PHASE2:Hg19::chr8:21924052..21924103,+#_d4ad3edd10321ce55c567c9de889416bp6@EPB49
4.72e-37FFCP PHASE1:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04p1@PCDH1
4.72e-37FFCP PHASE2:Hg19::chr5:141257961..141258006,-#_a5194395519de7ffac8f4200571f4a04p1@PCDH1
5.26e-37FFCP PHASE1:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4p1@SHROOM4
5.26e-37FFCP PHASE2:Hg19::chrX:50557095..50557207,-#_4aea6025c3f2f8e7ab273c8c4ec7dfb4p1@SHROOM4
6.62e-37FFCP PHASE2:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832p1@LYPD1
6.62e-37FFCP PHASE1:Hg19::chr2:133427767..133427797,-#_bd018a98e4b9578ac2958ca3fdee4832p1@LYPD1
1.11e-36FFCP PHASE1:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5p1@SYNPO
1.11e-36FFCP PHASE2:Hg19::chr5:150004188..150004308,+#_cd73d26d3a70e4ee2351937063349fb5p1@SYNPO
1.16e-36FFCP PHASE1:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46cp2@LOC100126784
1.16e-36FFCP PHASE2:Hg19::chr11:19736307..19736327,-#_89b0f9a1305a222c994e02d41d30f46cp2@LOC100126784
3.71e-36FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669cp1@NFIB
3.71e-36FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_5527fc9fd5b0f6988093868b85a4669cp1@NFIB
4.4e-36FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7p1@ABLIM3
4.4e-36FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_37903366aa371181fe9c74e2066a19c7p1@ABLIM3
1.28e-35FFCP PHASE1:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101ap1@SLC9A3R2
1.28e-35FFCP PHASE2:Hg19::chr16:2076875..2076915,+#_77d4b65a8c6efd20137e61e5ac92101ap1@SLC9A3R2
2.42e-35FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5eep1@DDAH1
2.42e-35FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_c70b080637d871729671232d403cd5eep1@DDAH1
3.09e-35FFCP PHASE1:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37bap1@MANSC1
3.09e-35FFCP PHASE2:Hg19::chr12:12503156..12503216,-#_b91e263ae1e692c0ab3640df394e37bap1@MANSC1
4.78e-35FFCP PHASE2:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7p1@C17orf28
4.78e-35FFCP PHASE1:Hg19::chr17:72968809..72968834,-#_7953afce3873b9f6ce226bdd655dc7b7p1@C17orf28
1.16e-34FFCP PHASE2:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2dap2@PLEKHG5
1.16e-34FFCP PHASE1:Hg19::chr1:6545502..6545548,-#_7a941f256cde4212324ea3fbdd61c2dap2@PLEKHG5
1.44e-34FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25p2@HHIP
1.44e-34FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_eae64c5b10c1c5855f127c37fd644c25p2@HHIP
1.98e-34FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6p2@SOX17
1.98e-34FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_a8b4a039cdafc47198f4540a59aad9c6p2@SOX17
2.32e-34FFCP PHASE2:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2p1@NOS3
2.32e-34FFCP PHASE1:Hg19::chr7:150690857..150690878,+#_ca75c87f43f910b41fc8d3c2658166a2p1@NOS3
2.53e-34FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3ap1@CACNG7
2.53e-34FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_8cb635c9a1dd269909c8965c61c53e3ap1@CACNG7
6.6e-34FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9p@chr19:54411852..54411908, +
6.6e-34FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_307dbe8b29fec0b1a1f37328a0f738e9p@chr19:54411852..54411908, +
7.68e-34FFCP PHASE1:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7p@chr5:66311078..66311108, +
7.68e-34FFCP PHASE2:Hg19::chr5:66311078..66311108,+#_b85348894b5e30ea4ef62d824a9886a7p@chr5:66311078..66311108, +
8.58e-34FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712bap1@ELTD1
8.58e-34FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_ed68efc45ff415b55e05f34d8d5712bap1@ELTD1
1.07e-33FFCP PHASE2:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8p1@ECSCR
1.07e-33FFCP PHASE1:Hg19::chr5:138842286..138842336,-#_d1eba2fc8412ccd1fc68ed3b5c42c4a8p1@ECSCR
1.19e-33FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7p1@BOK
1.19e-33FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_46f34509b058d2f92978b022489089e7p1@BOK
1.26e-33FFCP PHASE1:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bdp3@HHIP
1.26e-33FFCP PHASE2:Hg19::chr4:145567278..145567296,+#_0330727f3f2b67456482e129595371bdp3@HHIP
2.27e-33FFCP PHASE2:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5p1@FAM107A
2.27e-33FFCP PHASE1:Hg19::chr3:58563094..58563126,-#_43fd6b4285cf1410ecb2e2710a852ae5p1@FAM107A
2.31e-33FFCP PHASE2:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dadp8@NFIB
2.31e-33FFCP PHASE1:Hg19::chr9:14314946..14314983,-#_0c6343186099899eaee9eac6396e3dadp8@NFIB
2.42e-33FFCP PHASE1:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0p3@TEK
2.42e-33FFCP PHASE2:Hg19::chr9:27109199..27109248,+#_5b43b9778728447c798bf0a1f41e4ec0p3@TEK
2.59e-33FFCP PHASE1:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001p1@EDN1
2.59e-33FFCP PHASE2:Hg19::chr6:12290586..12290600,+#_7a6400f360b3e12cacd94cc1b3821001p1@EDN1
2.72e-33FFCP PHASE1:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8p2@TNK2
2.72e-33FFCP PHASE2:Hg19::chr3:195619579..195619630,-#_b2da389506d2683a2769ba57d9f077d8p2@TNK2
3.0e-33FFCP PHASE1:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022p1@APLN
3.0e-33FFCP PHASE2:Hg19::chrX:128788923..128788942,-#_3b49237de304fe0b5975983213b9f022p1@APLN
3.06e-33FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087p1@ZC3H7B
3.06e-33FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_9cd15852f96a8e6588ccd7df99627087p1@ZC3H7B
3.73e-33FFCP PHASE2:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04p2@CDH5
3.73e-33FFCP PHASE1:Hg19::chr16:66400533..66400545,+#_5bde25a1083a3ff0c4f995a2eb0a0e04p2@CDH5
6.09e-33FFCP PHASE2:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8dp@chr16:19869059..19869073, -
6.09e-33FFCP PHASE1:Hg19::chr16:19869059..19869073,-#_07f713e9a33fae327691834469617f8dp@chr16:19869059..19869073, -

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