Personal tools

UBERON:0005408: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005408
|alt_id=
|name=circumventricular organ
|namespace=
|def="Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
|xref=FMA:84081;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;MA:0002942;;NIF_GrossAnatomy:nlx_anat_20090312
|is_a=UBERON:0002616
|synonym="circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312];;"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
|comment=AO notes: MA subdivides into sensory and secretory
|comment=AO notes: MA subdivides into sensory and secretory
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005408
|is_a=UBERON:0002616
|is_obsolete=
|located_in=
|located_in=
|name=circumventricular organ
|namespace=
|obo_creation_date=
|part_of=UBERON:0000955
|part_of=UBERON:0000955
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312];;"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
|union_of=
|xref=FMA:84081;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;MA:0002942;;NIF_GrossAnatomy:nlx_anat_20090312
}}
}}

Revision as of 11:36, 12 September 2014

Name:circumventricular organ
Definition:"Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
Xrefs:
links:

FMA:84081
[ Gray734.png Gray734.png]
MA:0002942

NIF_GrossAnatomy:nlx_anat_20090312
Synonyms: "circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
Comments:AO notes: MA subdivides into sensory and secretory

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0010134 (secretory circumventricular organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005408 (circumventricular organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_b3259e9f673ae942fe92d28dd8110bccp10@SLC35C2
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9782610..9782613, +
3.29e-195FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_b3259e9f673ae942fe92d28dd8110bccp35@DMD
3.29e-195FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51174216..51174239, -
3.29e-195FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_b3259e9f673ae942fe92d28dd8110bccp@chr1:99860883..99860921, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473472..135473477, -
3.29e-195FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:87751931..87751947, -
3.29e-195FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9186866..9186885, -
3.29e-195FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:55470984..55471009, -
3.29e-195FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_b3259e9f673ae942fe92d28dd8110bccp@chr13:68306577..68306607, +
3.29e-195FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_b3259e9f673ae942fe92d28dd8110bccp@chr3:139938385..139938390, +
3.29e-195FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_b3259e9f673ae942fe92d28dd8110bccp28@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17040158..17040170, +
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_b3259e9f673ae942fe92d28dd8110bccp@chr14:49512240..49512248, -
3.29e-195FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_b3259e9f673ae942fe92d28dd8110bccp1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:47662877..47662880, -
3.29e-195FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_b3259e9f673ae942fe92d28dd8110bccp@chr1:99860753..99860764, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_b3259e9f673ae942fe92d28dd8110bccp4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:120842768..120842790, -
3.29e-195FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_b3259e9f673ae942fe92d28dd8110bccp@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_b3259e9f673ae942fe92d28dd8110bccp8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_b3259e9f673ae942fe92d28dd8110bccp22@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_b3259e9f673ae942fe92d28dd8110bccp@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_b3259e9f673ae942fe92d28dd8110bccp32@DMD
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_b3259e9f673ae942fe92d28dd8110bccp@chr9:37692930..37692936, +
3.29e-195FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135515989..135515991, +
3.29e-195FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_b3259e9f673ae942fe92d28dd8110bccp@chr2:4224059..4224062, -
3.29e-195FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_b3259e9f673ae942fe92d28dd8110bccp9@GNB3
3.29e-195FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51808960..51808964, -
3.29e-195FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_b3259e9f673ae942fe92d28dd8110bccp@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:107545606..107545631, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:54952412..54952416, -
3.29e-195FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:129084265..129084288, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_b3259e9f673ae942fe92d28dd8110bccp16@MATN2
3.29e-195FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17141934..17141935, +
3.29e-195FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:57975398..57975401, +
3.29e-195FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_b3259e9f673ae942fe92d28dd8110bccp6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_b3259e9f673ae942fe92d28dd8110bccp4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:45782019..45782028, +
3.29e-195FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9782665..9782674, +
3.29e-195FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:18066392..18066397, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041244..18041266, -
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_b3259e9f673ae942fe92d28dd8110bccp@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_b3259e9f673ae942fe92d28dd8110bccp17@FMN2
3.29e-195FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_b3259e9f673ae942fe92d28dd8110bccp@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_b3259e9f673ae942fe92d28dd8110bccp11@SRRM3
3.29e-195FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_b3259e9f673ae942fe92d28dd8110bccp4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_b3259e9f673ae942fe92d28dd8110bccp@chr14:55282406..55282415, -
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_b3259e9f673ae942fe92d28dd8110bccp@chr2:4224059..4224062, -
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_b3259e9f673ae942fe92d28dd8110bccp2@ENST00000414895
3.29e-195FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_b3259e9f673ae942fe92d28dd8110bccp@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_b3259e9f673ae942fe92d28dd8110bccp9@PRR16
3.29e-195FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18067959..18067962, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_b3259e9f673ae942fe92d28dd8110bccp8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_b3259e9f673ae942fe92d28dd8110bccp3@NEUROG1
3.29e-195FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135499228..135499260, -
3.29e-195FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51174216..51174239, -
3.29e-195FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_b3259e9f673ae942fe92d28dd8110bccp16@ZFAT
3.29e-195FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_b3259e9f673ae942fe92d28dd8110bccp@chr18:56962131..56962138, -
3.29e-195FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_b3259e9f673ae942fe92d28dd8110bccp@chr9:137539895..137539904, +
3.29e-195FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:47662877..47662880, -
3.29e-195FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_b3259e9f673ae942fe92d28dd8110bccp@chr4:1188439..1188454, -
3.29e-195FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:107545606..107545631, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473063..135473075, -
3.29e-195FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_b3259e9f673ae942fe92d28dd8110bccp22@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:129084265..129084288, -
3.29e-195FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18067904..18067908, -
3.29e-195FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:57914399..57914402, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:55470984..55471009, -
3.29e-195FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_b3259e9f673ae942fe92d28dd8110bccp@chr13:68306577..68306607, +
3.29e-195FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473876..135473885, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135504353..135504365, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:18066399..18066411, -
3.29e-195FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135521466..135521470, +
3.29e-195FFCP PHASE1:Hg19::chr3:54952420..54952425,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:54952420..54952425, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041199..18041200, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9782665..9782674, +
3.29e-195FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_b3259e9f673ae942fe92d28dd8110bccp@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_b3259e9f673ae942fe92d28dd8110bccp11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_b3259e9f673ae942fe92d28dd8110bccp@chr12:81859007..81859036, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005408&oldid=3274451"