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UBERON:0002616

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Name:regional part of brain
Namespace:FANTOM
Definition:"A multi-tissue structure that is part of a brain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:55676
ncithesaurus:Brain_Part
NIF_GrossAnatomy:birnlex_1167

SCTID:384763002
Synonyms: "anatomical structure of brain" EXACT [OBOL:automatic]
"biological structure of brain" EXACT [OBOL:automatic]
"brain anatomical structure" EXACT [OBOL:automatic]
"brain biological structure" EXACT [OBOL:automatic]
"brain part" EXACT []
"neuraxis segment" EXACT [FMA:55676]
"segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000073(regional part of nervous system),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0000369 (corpus striatum),UBERON:0001890 (forebrain),UBERON:0001891 (midbrain),UBERON:0002028 (hindbrain),UBERON:0002275 (reticular formation),UBERON:0002298 (brainstem),UBERON:0002680 (regional part of metencephalon),UBERON:0002780 (regional part of forebrain),UBERON:0002950 (regional part of midbrain),UBERON:0004684 (raphe nuclei),UBERON:0005408 (circumventricular organ),UBERON:0010009 (aggregate regional part of brain),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon),UBERON:0015827 (brainstem reticular formation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002616 (regional part of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.03e-139FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_ba6c931a600123e58ed2d1e553fd5932p5@ST8SIA3
1.03e-139FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_ba6c931a600123e58ed2d1e553fd5932p5@ST8SIA3
1.4e-135FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_22291291f06a50d1fbd3d60a02b72a68p3@CTNND2
1.4e-135FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_22291291f06a50d1fbd3d60a02b72a68p3@CTNND2
1.47e-135FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_5cd69b3257baf52004c83cc782f40de3p2@RFX4
1.47e-135FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_5cd69b3257baf52004c83cc782f40de3p2@RFX4
1.29e-133FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_500f7a015c7334323727edc1732769eap1@ENST00000412957
1.29e-133FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_500f7a015c7334323727edc1732769eap1@ENST00000412957
1.78e-132FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_9754a7de5bf2e12f19be85a904e25b6ep2@GABRG1
1.78e-132FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_9754a7de5bf2e12f19be85a904e25b6ep2@GABRG1
1.89e-132FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_09305b994e9775e2875aadfd075d3d9ap3@NRXN1
1.89e-132FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_09305b994e9775e2875aadfd075d3d9ap3@NRXN1
4.31e-132FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_dcefb1356595c6db32be49934241aa9cp@chr5:87439352..87439386, -
4.31e-132FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_dcefb1356595c6db32be49934241aa9cp@chr5:87439352..87439386, -
5.61e-132FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_a97a47ef60a67242150462d838732605p17@PRKACB
5.61e-132FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_a97a47ef60a67242150462d838732605p17@PRKACB
1.28e-130FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_4c9b5a9fe3d4f56d55a0f8075dbe77b8p4@APC
1.28e-130FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_4c9b5a9fe3d4f56d55a0f8075dbe77b8p4@APC
2.58e-130FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_b8edc7b87056dd6794dad7e32f258b6dp8@CTNND2
2.58e-130FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_b8edc7b87056dd6794dad7e32f258b6dp8@CTNND2
3.44e-130FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_3b4f0c93446efc74932f365452f484fdp1@RFX4
3.44e-130FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_3b4f0c93446efc74932f365452f484fdp1@RFX4
6.81e-130FFCP PHASE1:Hg19::chr6:136847393..136847403,-#_367212f7c4a31d44fdd422a53a9ec979p15@MAP7
6.81e-130FFCP PHASE2:Hg19::chr6:136847393..136847403,-#_367212f7c4a31d44fdd422a53a9ec979p15@MAP7
1.57e-129FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_1753d048add5dbd80b3bf663e6ae2380p@chr5:146314142..146314146, -
1.57e-129FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_1753d048add5dbd80b3bf663e6ae2380p@chr5:146314142..146314146, -
3.15e-129FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_e46d42888347a19a39b51063704497d6p7@DTNA
3.15e-129FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_e46d42888347a19a39b51063704497d6p7@DTNA
5.62e-129FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_b23e55c88f0e09b5f28d9a3b757ad4a0p2@KCNJ16
5.62e-129FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_b23e55c88f0e09b5f28d9a3b757ad4a0p2@KCNJ16
6.58e-129FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_bac21da3bf675384178e603012dfcba5p9@PRKACB
6.58e-129FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_bac21da3bf675384178e603012dfcba5p9@PRKACB
9.65e-129FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_ce5b9a6eaa5a1f0d3cfde242700af0c8p4@ARHGEF26-AS1
9.65e-129FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_ce5b9a6eaa5a1f0d3cfde242700af0c8p4@ARHGEF26-AS1
6.04e-128FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_0a08e5b027621366ebd994c676fcb16bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.04e-128FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_0a08e5b027621366ebd994c676fcb16bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.67e-128FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_6a65dfa52ae2a5c31652412ef3cc6d64p4@RFX4
6.67e-128FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_6a65dfa52ae2a5c31652412ef3cc6d64p4@RFX4
7.68e-128FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_2b843f5b5e801e287eb3e26167829dc3p1@LOC100289347
7.68e-128FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_2b843f5b5e801e287eb3e26167829dc3p1@LOC100289347
1.54e-126FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_3759b6293049151c08d94fee8b5225a6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.54e-126FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_3759b6293049151c08d94fee8b5225a6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.55e-126FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_32884991f85bdab84ff0882dcba7e491p4@SLC1A2
1.55e-126FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_32884991f85bdab84ff0882dcba7e491p4@SLC1A2
1.87e-126FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_288cb56083f916d5c4bb4bfe12dc8eeep2@CTNND2
1.87e-126FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_288cb56083f916d5c4bb4bfe12dc8eeep2@CTNND2
2.32e-126FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_aca905ef8134b036832c3f1a0bbf1123p@chr6:80131670..80131724, +
2.32e-126FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_aca905ef8134b036832c3f1a0bbf1123p@chr6:80131670..80131724, +
2.35e-126FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_f09ee588847064f3ff6ea4792a5c6ce9p17@NTRK2
2.35e-126FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_f09ee588847064f3ff6ea4792a5c6ce9p17@NTRK2
2.47e-126FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_65072b09751e70c0950836c272af9e7bp9@GPM6B
2.47e-126FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_65072b09751e70c0950836c272af9e7bp9@GPM6B
6.64e-126FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_df376d90f78e167d1829362cf75bd97ap1@ANKFN1
6.64e-126FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_df376d90f78e167d1829362cf75bd97ap1@ANKFN1
8.82e-126FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_74805fcc2a45cfa25a80039ac8f27a6ap3@SFXN5
8.82e-126FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_74805fcc2a45cfa25a80039ac8f27a6ap3@SFXN5
1.13e-125FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_9ce5a7dfda997fb95ab4848afab1baaap@chr15:46702499..46702523, +
1.13e-125FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_9ce5a7dfda997fb95ab4848afab1baaap@chr15:46702499..46702523, +
1.15e-125FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_3af9a052a503985cdc198ef1a2de3b0ep8@DST
1.15e-125FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_3af9a052a503985cdc198ef1a2de3b0ep8@DST
1.37e-125FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_c228f40c6e891c3bf01ecb05c82ca091p2@SERPINI1
1.37e-125FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_c228f40c6e891c3bf01ecb05c82ca091p2@SERPINI1
1.38e-125FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_60e24fc3937694621eccf8505a327ccap1@ATP10B
1.38e-125FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_60e24fc3937694621eccf8505a327ccap1@ATP10B
1.45e-125FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_a1acd7957b9d51e08d31d939b09107f6p1@GABRG1
1.45e-125FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_a1acd7957b9d51e08d31d939b09107f6p1@GABRG1
2.45e-125FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_f1a82684b04ef28f91c41a00094676acp8@PRKCZ
2.45e-125FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_f1a82684b04ef28f91c41a00094676acp8@PRKCZ
2.7e-125FFCP PHASE1:Hg19::chrX:139794589..139794595,+#_5094715d9599de1b6294e11d47965f3cp@chrX:139794589..139794595, +
2.7e-125FFCP PHASE2:Hg19::chrX:139794589..139794595,+#_5094715d9599de1b6294e11d47965f3cp@chrX:139794589..139794595, +
2.73e-125FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_852bac6a97d293cc97716d45a2662041p6@JPH4
2.73e-125FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_852bac6a97d293cc97716d45a2662041p6@JPH4
4.98e-125FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_70282e7b2fb0dbc49857f4e9dfa85d2fp3@GABRA1
4.98e-125FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_70282e7b2fb0dbc49857f4e9dfa85d2fp3@GABRA1
1.02e-124FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_c674abcc6d3efa5194df2381abb8e3cdp@chr7:47420733..47420758, -
1.02e-124FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_c674abcc6d3efa5194df2381abb8e3cdp@chr7:47420733..47420758, -
1.87e-124FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_7c1e69bc51aa7a9fdc8053315a564fcep@chr17:7558857..7558903, +
1.87e-124FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_7c1e69bc51aa7a9fdc8053315a564fcep@chr17:7558857..7558903, +
2.2e-124FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_2718c9b479c7b2fb41edf625fa85768cp1@GPR61
2.2e-124FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_2718c9b479c7b2fb41edf625fa85768cp1@GPR61
2.34e-124FFCP PHASE1:Hg19::chr6:29595998..29596020,-#_cdf94611b52789f72f162eea57b1cbdep5@GABBR1
2.34e-124FFCP PHASE2:Hg19::chr6:29595998..29596020,-#_cdf94611b52789f72f162eea57b1cbdep5@GABBR1
4.18e-124FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_d9821de0187286ee99ebdaf54bcd63cbp2@uc002fch.1
4.18e-124FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_d9821de0187286ee99ebdaf54bcd63cbp2@uc002fch.1
4.41e-124FFCP PHASE2:Hg19::chr5:11904100..11904112,-#_6d17ec502e4a94afc970e753622d430cp19@CTNND2
4.41e-124FFCP PHASE1:Hg19::chr5:11904100..11904112,-#_6d17ec502e4a94afc970e753622d430cp19@CTNND2
5.54e-124FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_002e909e7f3f38c3a549400487279ebcp3@GABRG1
5.54e-124FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_002e909e7f3f38c3a549400487279ebcp3@GABRG1
1.31e-123FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_7d64b27dca1db286d219a63b1c0fe740p5@AQP4
1.31e-123FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_7d64b27dca1db286d219a63b1c0fe740p5@AQP4
1.63e-123FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_08f41326be54d40d896de9387014ca53p2@SRCIN1
1.63e-123FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_08f41326be54d40d896de9387014ca53p2@SRCIN1
1.85e-123FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_bd7a4c6b34c54530d02c861fe36cc238p9@MAP2
1.85e-123FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_bd7a4c6b34c54530d02c861fe36cc238p9@MAP2
2.38e-123FFCP PHASE1:Hg19::chr5:161494521..161494557,+#_2a4b75495c7f5865fde8a11d6531eb11p7@GABRG2
2.38e-123FFCP PHASE2:Hg19::chr5:161494521..161494557,+#_2a4b75495c7f5865fde8a11d6531eb11p7@GABRG2
3.91e-123FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_c966ccb8fb58c6826cf31a90bb30c31ep2@PAQR6
3.91e-123FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_c966ccb8fb58c6826cf31a90bb30c31ep2@PAQR6
6.32e-123FFCP PHASE2:Hg19::chr2:73286294..73286310,-#_464bf2f1f9b5402fe4d38538e734445ap4@SFXN5
6.32e-123FFCP PHASE1:Hg19::chr2:73286294..73286310,-#_464bf2f1f9b5402fe4d38538e734445ap4@SFXN5