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{{CL
{{CL
|id=CL:0000064
|alt_id=
|name=ciliated cell
|namespace=cell
|def="A cell that has a filiform extrusion of the cell surface." [GOC:tfm]
|xref=XAO:0000031
|is_a=CL:0000063
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell that has a filiform extrusion of the cell surface." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000064
|is_a=CL:0000003
|is_obsolete=
|located_in=
|located_in=
|name=ciliated cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=XAO:0000031
}}
}}

Latest revision as of 16:29, 12 September 2014

Name:ciliated cell
Namespace:FANTOM
Definition:"A cell that has a filiform extrusion of the cell surface." [GOC:tfm]
Xrefs:
links:
XAO:0000031


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000067 (ciliated epithelial cell),CL:0005012 (multi-ciliated epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000064 (ciliated cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.93e-147FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_a768e7dc9ac72382e000522400c68326p@chr12:97856211..97856221, +
8.93e-147FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_a768e7dc9ac72382e000522400c68326p@chr12:97856211..97856221, +
7.78e-118FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_3269d0e27d2db76dd2e81202eb730247p5@SFRP1
7.78e-118FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_3269d0e27d2db76dd2e81202eb730247p@chr13:36052762..36052767, -
7.78e-118FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_3269d0e27d2db76dd2e81202eb730247p5@SFRP1
7.78e-118FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_3269d0e27d2db76dd2e81202eb730247p@chr13:36052762..36052767, -
2.59e-117FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_23551af19ecb715b074957887c5d3d04p@chr16:58896129..58896134, -
2.59e-117FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_23551af19ecb715b074957887c5d3d04p@chrX:106198807..106198826, -
2.59e-117FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_23551af19ecb715b074957887c5d3d04p@chrX:106198807..106198826, -
2.59e-117FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_23551af19ecb715b074957887c5d3d04p@chr16:58896129..58896134, -
4.06e-99FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_d73cd4725f4055d117a68d8be6bef9a9p33@PRKCH
4.06e-99FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_d73cd4725f4055d117a68d8be6bef9a9p33@PRKCH
1.55e-98FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_55ccc8b39c3343ed8c4880d6eaddd0e8p2@RIPPLY1
1.55e-98FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_55ccc8b39c3343ed8c4880d6eaddd0e8p2@RIPPLY1
6.24e-88FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_85bb2b20ae0a423c1939ff39239d64f4p@chr2:210798666..210798677, +
6.24e-88FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_85bb2b20ae0a423c1939ff39239d64f4p@chr2:210798666..210798677, +
1.52e-87FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_b4385416895ddf0c666f67ef183d05a1p@chr13:36052713..36052724, -
1.52e-87FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_b4385416895ddf0c666f67ef183d05a1p@chr13:36052713..36052724, -
4.06e-85FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_5b8a5c7fe10dd9cdd7f9219fe70fb984p1@ENST00000526061
4.06e-85FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_5b8a5c7fe10dd9cdd7f9219fe70fb984p1@ENST00000526061
9.61e-85FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_3d9a3ed02b348c8c87bfb039d3d0ad29p@chr10:91294399..91294401, -
9.61e-85FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_3d9a3ed02b348c8c87bfb039d3d0ad29p@chr10:91294399..91294401, -
1.28e-84FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_18004524052e272e2a9c0efc69334e12p1@BC033145
1.28e-84FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_18004524052e272e2a9c0efc69334e12p1@BC033145
4.72e-75FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_e86d2ee40e6e9210ba3813cd0eddab29p3@ENST00000437916
4.72e-75FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_e86d2ee40e6e9210ba3813cd0eddab29p3@ENST00000437916
1.66e-74FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_f5923acb10d8accb106e4c6457fdb751p8@FAM92A1
1.66e-74FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_f5923acb10d8accb106e4c6457fdb751p8@FAM92A1
2.75e-74FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_58aed24b1ba3a1f72060559a06c3a6dcp3@ENST00000505537
2.75e-74FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_58aed24b1ba3a1f72060559a06c3a6dcp3@ENST00000505537
7.85e-67FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_fe339e2888d76f8c3c71b827cefa6bb2p@chr3:110846331..110846333, +
7.85e-67FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_fe339e2888d76f8c3c71b827cefa6bb2p@chr3:110846331..110846333, +
9.82e-67FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_b0ab9e0d07bb03e18c11643301b5adcdp@chr2:237677787..237677800, +
9.82e-67FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_b0ab9e0d07bb03e18c11643301b5adcdp@chr2:237677787..237677800, +
1.54e-66FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_c64b5995c83268e05fcde655630f0db3p14@NOX4
1.54e-66FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_c64b5995c83268e05fcde655630f0db3p14@NOX4
1.71e-66FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_7c0e7d030845d7f74ad7d35568163523p@chr1:218579326..218579337, +
1.71e-66FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_7c0e7d030845d7f74ad7d35568163523p@chr1:218579326..218579337, +
2.39e-66FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_38aa88ab6ee51a341a8e16aef7aed1c4p@chr2:63196015..63196016, +
2.39e-66FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_38aa88ab6ee51a341a8e16aef7aed1c4p@chr19:30716539..30716546, +
2.39e-66FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_38aa88ab6ee51a341a8e16aef7aed1c4p@chr2:63196015..63196016, +
2.39e-66FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_38aa88ab6ee51a341a8e16aef7aed1c4p@chr19:30716539..30716546, +
2.4e-66FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_f135dac4dba9cef5c7dbd413159544e8p@chr7:115723897..115723915, -
2.4e-66FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_f135dac4dba9cef5c7dbd413159544e8p@chr7:115723897..115723915, -
2.41e-66FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_04d98679019cd17e7e4d5d1f999af1d3p1@ENST00000381790
2.41e-66FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_04d98679019cd17e7e4d5d1f999af1d3p1@ENST00000381790
3.35e-66FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_2208000b0363ef8e94cc5b7a914555a0p1@MIR184
3.35e-66FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_2208000b0363ef8e94cc5b7a914555a0p1@MIR184
4.68e-66FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_8362b939931de4af651d8852afee2b02p@chr3:50191610..50191612, -
4.68e-66FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_8362b939931de4af651d8852afee2b02p@chr3:50191610..50191612, -
6.53e-66FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_1f0ab7b720a602aaf2cd1bf6932acd40p@chrX:106142727..106142730, -
6.53e-66FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_1f0ab7b720a602aaf2cd1bf6932acd40p@chr1:12416343..12416350, +
6.53e-66FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_1f0ab7b720a602aaf2cd1bf6932acd40p@chrX:106142727..106142730, -
6.53e-66FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_1f0ab7b720a602aaf2cd1bf6932acd40p@chr1:12416343..12416350, +
2.43e-60FFCP PHASE2:Hg19::chr5:31235359..31235362,+#_10bf5d0f7c25e74c2a857dcc5fb5ecb8p@chr5:31235359..31235362, +
2.43e-60FFCP PHASE1:Hg19::chr5:31235359..31235362,+#_10bf5d0f7c25e74c2a857dcc5fb5ecb8p@chr5:31235359..31235362, +
8.17e-60FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_b856eb40b8c98b67d782a3850e6e0967p1@CLRN1
8.17e-60FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_b856eb40b8c98b67d782a3850e6e0967p1@CLRN1
2.73e-59FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_435a6798b480dd91f82308cf1e16b7a4p@chr8:124692287..124692298, +
2.73e-59FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_435a6798b480dd91f82308cf1e16b7a4p@chr8:124692287..124692298, +
2.4e-55FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_e292d79238a988091be63b88c9602e31p30@PRKCH
2.4e-55FFCP PHASE1:Hg19::chr3:110888243..110888248,+#_e292d79238a988091be63b88c9602e31p@chr3:110888243..110888248, +
2.4e-55FFCP PHASE2:Hg19::chr3:110888243..110888248,+#_e292d79238a988091be63b88c9602e31p@chr3:110888243..110888248, +
2.4e-55FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_e292d79238a988091be63b88c9602e31p30@PRKCH
7.24e-55FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_6690ff78a1627f5c3fd52845ced5c275p5@SIX6
7.24e-55FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_6690ff78a1627f5c3fd52845ced5c275p5@SIX6
1.25e-54FFCP PHASE1:Hg19::chr14:60981789..60981803,+#_070a4642a853ffd7cf1a9bf6724da6b8p1@ENST00000557618
1.25e-54FFCP PHASE2:Hg19::chr14:60981789..60981803,+#_070a4642a853ffd7cf1a9bf6724da6b8p1@ENST00000557618
3.76e-54FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_fade6bc2f589fad8e2e5569fd13c06cap1@ENST00000456467
3.76e-54FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_fade6bc2f589fad8e2e5569fd13c06cap1@ENST00000456467
1.68e-53FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_e17a0c6fd3c9e09a808ba0aed28e2a87p@chr7:115723925..115723935, -
1.68e-53FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_e17a0c6fd3c9e09a808ba0aed28e2a87p@chr7:115723925..115723935, -
2.87e-53FFCP PHASE1:Hg19::chr4:169623845..169623853,+#_a6c50d612c0c36d88a3aa39795c301f2p@chr4:169623845..169623853, +
2.87e-53FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_a6c50d612c0c36d88a3aa39795c301f2p@chr2:35680607..35680613, -
2.87e-53FFCP PHASE2:Hg19::chr4:169623845..169623853,+#_a6c50d612c0c36d88a3aa39795c301f2p@chr4:169623845..169623853, +
2.87e-53FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_a6c50d612c0c36d88a3aa39795c301f2p@chr11:31671561..31671580, +
2.87e-53FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_a6c50d612c0c36d88a3aa39795c301f2p@chr2:35680607..35680613, -
2.87e-53FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_a6c50d612c0c36d88a3aa39795c301f2p@chr11:31671561..31671580, +
6.39e-53FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_f2f05eb630d55ab0115f4a293e663c37p@chr7:131803806..131803815, +
6.39e-53FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_f2f05eb630d55ab0115f4a293e663c37p@chr7:131803806..131803815, +
1.14e-50FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_7e7496014d16939991b7079171f6996fp7@PTPRU
1.14e-50FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_7e7496014d16939991b7079171f6996fp7@PTPRU
1.89e-50FFCP PHASE2:Hg19::chr13:94028319..94028321,+#_578e3e791582a469e6234d68404a3c9cp@chr13:94028319..94028321, +
1.89e-50FFCP PHASE1:Hg19::chr13:94028319..94028321,+#_578e3e791582a469e6234d68404a3c9cp@chr13:94028319..94028321, +
4.05e-47FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_75889bed3a954a27c9dc13938ce5ef5cp@chr2:66670833..66670853, +
4.05e-47FFCP PHASE2:Hg19::chr11:2973356..2973367,-#_75889bed3a954a27c9dc13938ce5ef5cp11@NAP1L4
4.05e-47FFCP PHASE1:Hg19::chr10:103990396..103990405,+#_75889bed3a954a27c9dc13938ce5ef5cp@chr10:103990396..103990405, +
4.05e-47FFCP PHASE1:Hg19::chr11:2973356..2973367,-#_75889bed3a954a27c9dc13938ce5ef5cp11@NAP1L4
4.05e-47FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_75889bed3a954a27c9dc13938ce5ef5cp@chr2:66670833..66670853, +
4.05e-47FFCP PHASE2:Hg19::chr10:103990396..103990405,+#_75889bed3a954a27c9dc13938ce5ef5cp@chr10:103990396..103990405, +
8.84e-47FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_ffa02d5db4c81fccd3ac03feeab656aap1@RIPPLY1
8.84e-47FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_ffa02d5db4c81fccd3ac03feeab656aap1@RIPPLY1
8.84e-47FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_ffa02d5db4c81fccd3ac03feeab656aap3@SIX6
8.84e-47FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_ffa02d5db4c81fccd3ac03feeab656aap3@SIX6
1.21e-46FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_da1ec0f337c4caf7c21ef872136668b6p1@OPTC
1.21e-46FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_da1ec0f337c4caf7c21ef872136668b6p1@OPTC
1.21e-46FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_da1ec0f337c4caf7c21ef872136668b6p4@SIX6
1.21e-46FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_da1ec0f337c4caf7c21ef872136668b6p4@SIX6
4.17e-46FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_6c662a8a145fa8f3c710411d6f916722p8@NBEA
4.17e-46FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_6c662a8a145fa8f3c710411d6f916722p8@NBEA

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