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{{CL
{{CL
|id=CL:0000213
|alt_id=
|name=lining cell
|namespace=cell
|def="A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
|xref=
|is_a=CL:0000215
|synonym="boundary cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000213
|is_a=CL:0000215
|is_obsolete=
|located_in=
|located_in=
|name=lining cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="boundary cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:31, 12 September 2014

Name:lining cell
Namespace:FANTOM
Definition:"A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
Synonyms: "boundary cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000215(barrier cell)



Children


is a:CL:0000077 (mesothelial cell),CL:0000115 (endothelial cell),CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000213 (lining cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.38e-90FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
9.38e-90FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:92938260..92938264, -
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:117419958..117419964, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:74684893..74684910, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep4@Pag1
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:127816016..127816021, +

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