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CL:0000214

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Name:synovial cell
Namespace:FANTOM
Definition:"A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474]
Xrefs:
links:

BTO:0003652

FMA:66786
Synonyms: "hyaluronic acid secreting cell" EXACT []
"synoviocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000153(GAG secreting cell),CL:0000213(lining cell),CL:0002078(meso-epithelial cell)
develops_from:CL:0000134(mesenchymal cell)
part_of:UBERON:0002018(synovial membrane of synovial joint)



Children


is a:FF:10441-106E9 (synovial sarcoma cell line:HS-SY-II)
derives from:FF:0000187 (human synovial cell sample)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000214 (synovial cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
6.24e-88FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9bep31@SEMA3C
6.24e-88FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9bep31@SEMA3C
1.71e-66FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01p@chr18:22150956..22150983, +
1.71e-66FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01p@chr18:22150956..22150983, +
2.39e-66FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447cp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c+, p@chr1:172134736..172134739
2.39e-66FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447cp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c+, p@chr1:172134736..172134739
2.39e-66FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447cp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447cp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447cp1@ENST00000517363
2.39e-66FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447cp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447cp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447cp1@ENST00000517363
1.68e-53FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdfp5@CDCA2
1.68e-53FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdfp5@CDCA2
2.19e-53FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72feep@chr2:242009429..242009432, +
2.19e-53FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72feep@chr2:242009429..242009432, +
2.87e-53FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafbp@chr12:131476821..131476831, -
2.87e-53FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafbp@chr12:131476821..131476831, -
1.22e-44FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4p@chrY:58884631..58884640, +
1.22e-44FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4p@chrY:58884631..58884640, +
1.8e-38FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4p@chr1:142537706..142537723, -
1.8e-38FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4p@chr1:142537706..142537723, -
1.85e-36FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1p@chr10:131634104..131634108, -
1.85e-36FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1p@chr10:131634104..131634108, -
3.33e-34FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1p@chr17:9066265..9066271, +
3.33e-34FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1p@chr17:9066265..9066271, +
4.27e-34FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45bp1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr5:1043105..1043109, +
4.27e-34FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45bp1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr8:78774585..78774589, -
4.27e-34FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45bp5@FZD10
4.27e-34FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45bp15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68118244..68118272, +
4.27e-34FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr8:78774585..78774589, -
4.27e-34FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68118244..68118272, +
4.27e-34FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45bp15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr5:1043105..1043109, +
4.27e-34FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr10:135140510..135140524, -
4.27e-34FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45bp1@ENST00000519738
4.27e-34FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45bp1@LOC641364
4.27e-34FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45bp5@FZD10
5.51e-34FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1cp6@ACAN
5.51e-34FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1cp6@ACAN
5.96e-34FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6p@chr1:172145683..172145699, +
5.96e-34FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6p@chr17:63705566..63705573, -
5.96e-34FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6p3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6p@chr1:172145683..172145699, +
5.96e-34FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6p11@C6orf132
5.96e-34FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6p@chr13:73102090..73102097, -
5.96e-34FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6p11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6p@chr13:73102090..73102097, -
5.96e-34FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6p12@HOXC11
5.96e-34FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6p@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6p12@HOXC11
5.96e-34FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6p3@SKOR1
7.7e-34FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892ccep@chrY:13450855..13450866, +
7.7e-34FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892ccep@chrY:13450855..13450866, +
1.46e-31FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45p@chr19:18718172..18718197, +
1.46e-31FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45p@chr19:18718172..18718197, +
1.71e-30FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59p9@ERG
1.71e-30FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59p9@ERG
2.3e-30FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336ep8@ACAN
2.3e-30FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336ep@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336ep8@ACAN
2.3e-30FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336ep@chr1:186273262..186273282, +
7.54e-30FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899ap@chr1:186276427..186276448, +
7.54e-30FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899ap@chr1:186276427..186276448, +
8.12e-28FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cefp21@SEMA3C
8.12e-28FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cefp21@SEMA3C
1.39e-27FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295p@chr20:48160907..48160918, -
1.39e-27FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295p@chr20:48160907..48160918, -
1.82e-27FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4p35@CCNL1
1.82e-27FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4p7@WISP2
1.82e-27FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4p35@CCNL1
1.82e-27FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4p@chr1:142537912..142537938, -
1.82e-27FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4p@chr1:142537912..142537938, -
1.82e-27FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4p7@WISP2
2.08e-27FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aap@chr6:1609602..1609636, -
2.08e-27FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aap@chr6:1609602..1609636, -
2.08e-27FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aap@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aap@chr1:142539672..142539687, -
2.38e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0p2@ENST00000436845
2.38e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0p2@ENST00000436845
3.11e-27FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65p15@CFB
3.11e-27FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65p15@CFB
4.07e-27FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9p21@SULF1
4.07e-27FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9p21@SULF1

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