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CL:0000214

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Name:synovial cell
Namespace:FANTOM
Definition:"A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474]
Xrefs:
links:

BTO:0003652

FMA:66786
Synonyms: "hyaluronic acid secreting cell" EXACT []
"synoviocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000153(GAG secreting cell),CL:0000213(lining cell),CL:0002078(meso-epithelial cell)
develops_from:CL:0000134(mesenchymal cell)
part_of:UBERON:0002018(synovial membrane of synovial joint)



Children


is a:FF:10441-106E9 (synovial sarcoma cell line:HS-SY-II)
derives from:FF:0000187 (human synovial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000214 (synovial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
6.24e-88FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9bep31@SEMA3C
6.24e-88FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9bep31@SEMA3C
1.71e-66FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01p@chr18:22150956..22150983, +
1.71e-66FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01p@chr18:22150956..22150983, +
2.39e-66FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447cp1@ENST00000517363
2.39e-66FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447cp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447cp1@ENST00000517363
2.39e-66FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447cp9@SKOR1
2.39e-66FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447cp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447cp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447cp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447cp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447cp9@SKOR1
1.68e-53FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdfp5@CDCA2
1.68e-53FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdfp5@CDCA2
2.19e-53FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72feep@chr2:242009429..242009432, +
2.19e-53FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72feep@chr2:242009429..242009432, +
2.87e-53FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafbp@chr12:131476821..131476831, -
2.87e-53FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafbp@chr12:131476821..131476831, -
1.22e-44FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4p@chrY:58884631..58884640, +
1.22e-44FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4p@chrY:58884631..58884640, +
1.8e-38FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4p@chr1:142537706..142537723, -
1.8e-38FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4p@chr1:142537706..142537723, -
1.85e-36FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1p@chr10:131634104..131634108, -
1.85e-36FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1p@chr10:131634104..131634108, -
3.33e-34FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1p@chr17:9066265..9066271, +
3.33e-34FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1p@chr17:9066265..9066271, +
4.27e-34FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45bp15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68124311..68124318, +
4.27e-34FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr5:1043105..1043109, +
4.27e-34FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68118244..68118272, +
4.27e-34FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45bp5@FZD10
4.27e-34FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr8:78774585..78774589, -
4.27e-34FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45bp1@ENST00000519738
4.27e-34FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr5:1043105..1043109, +
4.27e-34FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45bp1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr12:91435143..91435151, -
4.27e-34FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45bp1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68118244..68118272, +
4.27e-34FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45bp1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45bp@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45bp15@HOXC10
4.27e-34FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45bp5@FZD10
4.27e-34FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45bp@chr8:78774585..78774589, -
5.51e-34FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1cp6@ACAN
5.51e-34FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1cp6@ACAN
5.96e-34FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6p11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6p12@HOXC11
5.96e-34FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6p3@SKOR1
5.96e-34FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6p@chr13:73102090..73102097, -
5.96e-34FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6p@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6p@chr1:172145683..172145699, +
5.96e-34FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6p3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6p@chr13:73102090..73102097, -
5.96e-34FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6p11@C6orf132
5.96e-34FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6p12@HOXC11
5.96e-34FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6p@chr17:63705566..63705573, -
5.96e-34FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6p@chr1:172145683..172145699, +
7.7e-34FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892ccep@chrY:13450855..13450866, +
7.7e-34FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892ccep@chrY:13450855..13450866, +
1.46e-31FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45p@chr19:18718172..18718197, +
1.46e-31FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45p@chr19:18718172..18718197, +
1.71e-30FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59p9@ERG
1.71e-30FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59p9@ERG
2.3e-30FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336ep8@ACAN
2.3e-30FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336ep@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336ep@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336ep8@ACAN
7.54e-30FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899ap@chr1:186276427..186276448, +
7.54e-30FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899ap@chr1:186276427..186276448, +
8.12e-28FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cefp21@SEMA3C
8.12e-28FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cefp21@SEMA3C
1.39e-27FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295p@chr20:48160907..48160918, -
1.39e-27FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295p@chr20:48160907..48160918, -
1.82e-27FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4p7@WISP2
1.82e-27FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4p35@CCNL1
1.82e-27FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4p@chr1:142537912..142537938, -
1.82e-27FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4p7@WISP2
1.82e-27FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4p35@CCNL1
1.82e-27FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4p@chr1:142537912..142537938, -
2.08e-27FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aap@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aap@chr6:1609602..1609636, -
2.08e-27FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aap@chr1:142539672..142539687, -
2.08e-27FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aap@chr6:1609602..1609636, -
2.38e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0p2@ENST00000436845
2.38e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0p2@ENST00000436845
3.11e-27FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65p15@CFB
3.11e-27FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65p15@CFB
4.07e-27FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9p21@SULF1
4.07e-27FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9p21@SULF1