CL:0000214
From FANTOM5_SSTAR
Name: | synovial cell | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474] | ||
Xrefs: |
| ||
Synonyms: |
"hyaluronic acid secreting cell" EXACT [] "synoviocyte" EXACT [] |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000153(GAG secreting cell),CL:0000213(lining cell),CL:0002078(meso-epithelial cell) |
---|---|
develops_from: | CL:0000134(mesenchymal cell) |
part_of: | UBERON:0002018(synovial membrane of synovial joint) |
Children
is a: | FF:10441-106E9 (synovial sarcoma cell line:HS-SY-II) |
---|---|
derives from: | FF:0000187 (human synovial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000214 (synovial cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
6.24e-88 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9be | p31@SEMA3C |
6.24e-88 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_ef76c68ed56354ded4338044d804c9be | p31@SEMA3C |
1.71e-66 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01 | p@chr18:22150956..22150983, + |
1.71e-66 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_0b21f019f4cc1cc12e70b9a8afd28c01 | p@chr18:22150956..22150983, + |
2.39e-66 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c | +, p@chr1:172134736..172134739 |
2.39e-66 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_6140b244d689fefdf314d6b5ea14447c | +, p@chr1:172134736..172134739 |
2.39e-66 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447c | p@chr2:181751144..181751146, + |
2.39e-66 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_6140b244d689fefdf314d6b5ea14447c | p@chr2:181751144..181751146, + |
2.39e-66 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447c | p@chr12:130786785..130786827, - |
2.39e-66 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447c | p9@SKOR1 |
2.39e-66 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134755..172134764, + |
2.39e-66 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447c | p1@ENST00000517363 |
2.39e-66 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134755..172134764, + |
2.39e-66 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_6140b244d689fefdf314d6b5ea14447c | p9@SKOR1 |
2.39e-66 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_6140b244d689fefdf314d6b5ea14447c | p1@ENST00000517363 |
2.39e-66 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_6140b244d689fefdf314d6b5ea14447c | p@chr12:130786785..130786827, - |
2.39e-66 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134667..172134711, + |
2.39e-66 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_6140b244d689fefdf314d6b5ea14447c | p@chr1:172134667..172134711, + |
1.68e-53 | FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdf | p5@CDCA2 |
1.68e-53 | FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_b95317e6e7a14e57fe7f36852543ccdf | p5@CDCA2 |
2.19e-53 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72fee | p@chr2:242009429..242009432, + |
2.19e-53 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_01f979a418dffc96405a9f87f4c72fee | p@chr2:242009429..242009432, + |
2.87e-53 | FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafb | p@chr12:131476821..131476831, - |
2.87e-53 | FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_a26dbdc4a3ec8a710916bc73583ecafb | p@chr12:131476821..131476831, - |
1.22e-44 | FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4 | p@chrY:58884631..58884640, + |
1.22e-44 | FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_2f92a96fd519d561f1f2cacd02a9f0d4 | p@chrY:58884631..58884640, + |
1.8e-38 | FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4 | p@chr1:142537706..142537723, - |
1.8e-38 | FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_e4f69b197aa3e5ef0574dc0219ea67e4 | p@chr1:142537706..142537723, - |
1.85e-36 | FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1 | p@chr10:131634104..131634108, - |
1.85e-36 | FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_6cb3971f67cb61af355ea2d132ae25c1 | p@chr10:131634104..131634108, - |
3.33e-34 | FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1 | p@chr17:9066265..9066271, + |
3.33e-34 | FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_3fc2eebfa3206d85bf499322b70897c1 | p@chr17:9066265..9066271, + |
4.27e-34 | FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68118244..68118272, + |
4.27e-34 | FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45b | p5@FZD10 |
4.27e-34 | FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45b | p15@HOXC10 |
4.27e-34 | FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr8:78774585..78774589, - |
4.27e-34 | FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68118244..68118272, + |
4.27e-34 | FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68124311..68124318, + |
4.27e-34 | FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_23dde7b72d915af2a08ed788c5d0a45b | p15@HOXC10 |
4.27e-34 | FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr5:1043105..1043109, + |
4.27e-34 | FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr12:91435143..91435151, - |
4.27e-34 | FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr10:135140510..135140524, - |
4.27e-34 | FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45b | p1@ENST00000519738 |
4.27e-34 | FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45b | p1@LOC641364 |
4.27e-34 | FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_23dde7b72d915af2a08ed788c5d0a45b | p5@FZD10 |
4.27e-34 | FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr15:68124311..68124318, + |
4.27e-34 | FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_23dde7b72d915af2a08ed788c5d0a45b | p1@LOC641364 |
4.27e-34 | FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_23dde7b72d915af2a08ed788c5d0a45b | p@chr5:1043105..1043109, + |
4.27e-34 | FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr10:135140510..135140524, - |
4.27e-34 | FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr12:91435143..91435151, - |
4.27e-34 | FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_23dde7b72d915af2a08ed788c5d0a45b | p1@ENST00000519738 |
4.27e-34 | FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_23dde7b72d915af2a08ed788c5d0a45b | p@chr8:78774585..78774589, - |
5.51e-34 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1c | p6@ACAN |
5.51e-34 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_1c36a4905930e94ecd8757c4c873da1c | p6@ACAN |
5.96e-34 | FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6 | p11@C6orf132 |
5.96e-34 | FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6 | p@chr13:73102090..73102097, - |
5.96e-34 | FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_4640f447cf663411278012509a8600a6 | p@chr13:73102090..73102097, - |
5.96e-34 | FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_4640f447cf663411278012509a8600a6 | p11@C6orf132 |
5.96e-34 | FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6 | p12@HOXC11 |
5.96e-34 | FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6 | p@chr17:63705566..63705573, - |
5.96e-34 | FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6 | p3@SKOR1 |
5.96e-34 | FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_4640f447cf663411278012509a8600a6 | p12@HOXC11 |
5.96e-34 | FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_4640f447cf663411278012509a8600a6 | p@chr17:63705566..63705573, - |
5.96e-34 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6 | p@chr1:172145683..172145699, + |
5.96e-34 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_4640f447cf663411278012509a8600a6 | p@chr1:172145683..172145699, + |
5.96e-34 | FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_4640f447cf663411278012509a8600a6 | p3@SKOR1 |
7.7e-34 | FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892cce | p@chrY:13450855..13450866, + |
7.7e-34 | FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_8bbfc37a2ca11fe44c8c3bb423892cce | p@chrY:13450855..13450866, + |
1.46e-31 | FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45 | p@chr19:18718172..18718197, + |
1.46e-31 | FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_9964b2c4c8bbdea4c22b123c9c59ab45 | p@chr19:18718172..18718197, + |
1.71e-30 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59 | p9@ERG |
1.71e-30 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_27c32889c9c015d5f1651d7912564a59 | p9@ERG |
2.3e-30 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336e | p@chr1:186273262..186273282, + |
2.3e-30 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336e | p8@ACAN |
2.3e-30 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c6cb109f4673bf77d8bd801ea4f7336e | p8@ACAN |
2.3e-30 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c6cb109f4673bf77d8bd801ea4f7336e | p@chr1:186273262..186273282, + |
7.54e-30 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899a | p@chr1:186276427..186276448, + |
7.54e-30 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_ecd04b1f1a54dba257bfd5c74928899a | p@chr1:186276427..186276448, + |
8.12e-28 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cef | p21@SEMA3C |
8.12e-28 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_d80bb20f0fd17430c60f4a8604b00cef | p21@SEMA3C |
1.39e-27 | FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295 | p@chr20:48160907..48160918, - |
1.39e-27 | FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_53a260f93b8022bce546bf0d55be9295 | p@chr20:48160907..48160918, - |
1.82e-27 | FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4 | p7@WISP2 |
1.82e-27 | FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4 | p35@CCNL1 |
1.82e-27 | FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4 | p@chr1:142537912..142537938, - |
1.82e-27 | FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_64c1998053e4825916744b18c69d0ac4 | p@chr1:142537912..142537938, - |
1.82e-27 | FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_64c1998053e4825916744b18c69d0ac4 | p7@WISP2 |
1.82e-27 | FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_64c1998053e4825916744b18c69d0ac4 | p35@CCNL1 |
2.08e-27 | FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr6:1609602..1609636, - |
2.08e-27 | FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr6:1609602..1609636, - |
2.08e-27 | FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr1:142539672..142539687, - |
2.08e-27 | FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_29e9e009b72b7c3e011454a34afcd5aa | p@chr1:142539672..142539687, - |
2.38e-27 | FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0 | p2@ENST00000436845 |
2.38e-27 | FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a7b6b22f4b54417d73fba4e89b0415d0 | p2@ENST00000436845 |
3.11e-27 | FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65 | p15@CFB |
3.11e-27 | FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65 | p@chr16:15680784..15680797, + |
3.11e-27 | FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_b002df741babd3fbaea9acdc3eea9d65 | p15@CFB |
3.11e-27 | FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_b002df741babd3fbaea9acdc3eea9d65 | p@chr16:15680784..15680797, + |
4.07e-27 | FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9 | p21@SULF1 |
4.07e-27 | FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_c9c465c85045fdff9159a6b1891045b9 | p21@SULF1 |