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{{CL
{{CL
|id=CL:0000307
|alt_id=CL:1000474
|name=tracheal epithelial cell
|namespace=cell
|def="An epithelial cell found in the trachea." [GOC:tfm]
|xref=FBbt:00005038;;FMA:74793
|is_a=CL:0002202
|synonym="tracheocyte" EXACT []
|comment=
|comment=
|alt_id=CL:1000474
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell found in the trachea." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000377
|develops_from=CL:0000377
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000307
|is_a=CL:0002202
|is_obsolete=
|located_in=
|located_in=
|name=tracheal epithelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003126
|part_of=UBERON:0003126
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="tracheocyte" EXACT []
|union_of=
|xref=FBbt:00005038;;FMA:74793
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:tracheal epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell found in the trachea." [GOC:tfm]
Xrefs:
links:

FBbt:00005038

FMA:74793
Synonyms: "tracheocyte" EXACT []
Alt_id: CL:1000474


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002202(epithelial cell of tracheobronchial tree)
develops_from:CL:0000377(tracheoblast)
part_of:UBERON:0003126(trachea)



Children


derives from:FF:0000189 (human tracheal epithelial cell sample),FF:0000645 (tracheal ciliated cell differentiation sample),FF:0000652 (tracheal ciliated cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11292-117A5 (Tracheal Epithelial Cells, donor1)
  • 11369-118A1 (Tracheal Epithelial Cells, donor2)
  • 11441-118I1 (Tracheal Epithelial Cells, donor3)
  • 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13368-143G2 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13369-143G3 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13370-143G4 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13371-143G5 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13372-143G6 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13373-143G7 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)

... further results Mouse (Mus musculus)

  • 11292-117A5 (Tracheal Epithelial Cells, donor1)
  • 11369-118A1 (Tracheal Epithelial Cells, donor2)
  • 11441-118I1 (Tracheal Epithelial Cells, donor3)
  • 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13368-143G2 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13369-143G3 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13370-143G4 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13371-143G5 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13372-143G6 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13373-143G7 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000307 (tracheal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_8441be581e807ad04d08641d9b84b504p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_8441be581e807ad04d08641d9b84b504p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_8441be581e807ad04d08641d9b84b504p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_8441be581e807ad04d08641d9b84b504p3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_8441be581e807ad04d08641d9b84b504p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_8441be581e807ad04d08641d9b84b504p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_8441be581e807ad04d08641d9b84b504p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_8441be581e807ad04d08641d9b84b504p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_8441be581e807ad04d08641d9b84b504p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_8441be581e807ad04d08641d9b84b504p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_8441be581e807ad04d08641d9b84b504p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_8441be581e807ad04d08641d9b84b504p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_8441be581e807ad04d08641d9b84b504p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_8441be581e807ad04d08641d9b84b504p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_8441be581e807ad04d08641d9b84b504p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_8441be581e807ad04d08641d9b84b504p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_8441be581e807ad04d08641d9b84b504p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_8441be581e807ad04d08641d9b84b504p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_8441be581e807ad04d08641d9b84b504p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_8441be581e807ad04d08641d9b84b504p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_8441be581e807ad04d08641d9b84b504p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_8441be581e807ad04d08641d9b84b504p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_8441be581e807ad04d08641d9b84b504p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_8441be581e807ad04d08641d9b84b504p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_8441be581e807ad04d08641d9b84b504p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_8441be581e807ad04d08641d9b84b504p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_8441be581e807ad04d08641d9b84b504p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_8441be581e807ad04d08641d9b84b504p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_8441be581e807ad04d08641d9b84b504p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_8441be581e807ad04d08641d9b84b504p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_8441be581e807ad04d08641d9b84b504p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_8441be581e807ad04d08641d9b84b504p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_8441be581e807ad04d08641d9b84b504p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_8441be581e807ad04d08641d9b84b504p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_8441be581e807ad04d08641d9b84b504p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_8441be581e807ad04d08641d9b84b504p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_8441be581e807ad04d08641d9b84b504p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_8441be581e807ad04d08641d9b84b504p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_8441be581e807ad04d08641d9b84b504p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_8441be581e807ad04d08641d9b84b504p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_8441be581e807ad04d08641d9b84b504p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_8441be581e807ad04d08641d9b84b504p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_8441be581e807ad04d08641d9b84b504p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_8441be581e807ad04d08641d9b84b504p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_8441be581e807ad04d08641d9b84b504p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_8441be581e807ad04d08641d9b84b504p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_8441be581e807ad04d08641d9b84b504p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_8441be581e807ad04d08641d9b84b504p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_8441be581e807ad04d08641d9b84b504p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_8441be581e807ad04d08641d9b84b504p@chr16:32641594..32641601, +
1.28e-84FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_07c83fb5cad9ff9bf4d92cc179b4c7a8p@chr7:135018332..135018336, +
1.28e-84FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_07c83fb5cad9ff9bf4d92cc179b4c7a8p@chr7:135018332..135018336, +
1.66e-74FFCP PHASE2:Hg19::chr5:52627415..52627422,-#_ffbc1a65120073c67e84cd4e54aab24dp@chr5:52627415..52627422, -
1.66e-74FFCP PHASE1:Hg19::chr5:52627415..52627422,-#_ffbc1a65120073c67e84cd4e54aab24dp@chr5:52627415..52627422, -
9.82e-67FFCP PHASE2:Hg19::chr4:74977698..74977700,+#_72aef0f663248a2534cc38fb07263042p@chr4:74977698..74977700, +
9.82e-67FFCP PHASE1:Hg19::chr4:74977698..74977700,+#_72aef0f663248a2534cc38fb07263042p@chr4:74977698..74977700, +
1.23e-66FFCP PHASE1:Hg19::chr4:26089776..26089781,+#_b463511c7695ffeb53c65a4628d7a77ep@chr4:26089776..26089781, +
1.23e-66FFCP PHASE2:Hg19::chr4:26089776..26089781,+#_b463511c7695ffeb53c65a4628d7a77ep@chr4:26089776..26089781, +
1.71e-66FFCP PHASE2:Hg19::chr5:138751193..138751196,-#_b641ed410d619f015c99302dc2364aa2p@chr5:138751193..138751196, -
1.71e-66FFCP PHASE1:Hg19::chr5:138751193..138751196,-#_b641ed410d619f015c99302dc2364aa2p@chr5:138751193..138751196, -
3.35e-66FFCP PHASE2:Hg19::chr11:46934513..46934519,+#_aaa41d7390a63ae584164233aa03fa23p@chr11:46934513..46934519, +
3.35e-66FFCP PHASE1:Hg19::chr11:46934513..46934519,+#_aaa41d7390a63ae584164233aa03fa23p@chr11:46934513..46934519, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_6245cee9d0dfc58d8460dcb56ac8e401p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_6245cee9d0dfc58d8460dcb56ac8e401p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437587..121437593, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr15:38385124..38385138, +

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