Personal tools

UBERON:0003126

From FANTOM5_SSTAR

Jump to: navigation, search

Name:trachea
Namespace:FANTOM
Definition:"A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea]
Xrefs:
links:

AAO:0010140
BTO:0001388
EFO:0000935
EHDAA2:0002066
EHDAA:3078
EMAPA:16853
EV:0100040
FMA:7394
GAID:361
[1]
[2]
MA:0000441
MAT:0000137
MESH:A.04.889
MIAA:0000137
ncithesaurus:Trachea
OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA
SCTID:181213009
VHOG:0000371

XAO:0000118
Synonyms: "cartilaginous trachea" EXACT []
"tracheal tubule" RELATED [BTO:0001388]
"vertebrate trachea" EXACT SENSU []
"windpipe" EXACT []
Comments:In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx.
Subset: major_organ
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000117(respiratory tube)
develops_from:UBERON:0008947(respiratory primordium)
part_of:UBERON:0007196(tracheobronchial tree)



Children

derives from:FF:0010029 (human trachea - adult sample),FF:0010058 (human trachea - fetal sample)
part of:CL:0000307 (tracheal epithelial cell),CL:0002600 (smooth muscle cell of trachea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003126 (trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp2@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_d56e7ff488a3086bb8e3c0fe2b8a6ebbp1@ENSMUST00000170876, p1@uc011ydj.1
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_4ded33160ead9e40cbee21cb3a5c88b0p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_4ded33160ead9e40cbee21cb3a5c88b0p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_4ded33160ead9e40cbee21cb3a5c88b0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_4ded33160ead9e40cbee21cb3a5c88b0p@chr11:29642912..29642916, -
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_90549327e4f18fdf422f4eef2d52d68bp@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_90549327e4f18fdf422f4eef2d52d68bp@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_90549327e4f18fdf422f4eef2d52d68bp@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_90549327e4f18fdf422f4eef2d52d68bp@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_90549327e4f18fdf422f4eef2d52d68bp@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_90549327e4f18fdf422f4eef2d52d68bp@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_90549327e4f18fdf422f4eef2d52d68bp@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_90549327e4f18fdf422f4eef2d52d68bp@chr19:47928736..47928764, +
4.76e-57FFCP PHASE2:Hg19::chr5:180017253..180017257,-#_f6bcfe52fcaf0ec855de165c456c693ep@chr5:180017253..180017257, -
4.76e-57FFCP PHASE1:Hg19::chr5:180017253..180017257,-#_f6bcfe52fcaf0ec855de165c456c693ep@chr5:180017253..180017257, -
4.9e-53FFCP PHASE1:Mm9::chrX:163645025..163645028,+#_7ea9a598a3122a692ade973287b92408p@chrX:163645025..163645028, +
4.9e-53FFCP PHASE1:Mm9::chr11:96608968..96608974,-#_7ea9a598a3122a692ade973287b92408p2@ENSMUST00000166907
4.9e-53FFCP PHASE1:Mm9::chr6:147212455..147212462,-#_7ea9a598a3122a692ade973287b92408p6@Pthlh
4.9e-53FFCP PHASE1:Mm9::chr5:103804464..103804467,+#_7ea9a598a3122a692ade973287b92408p@chr5:103804464..103804467, +
4.9e-53FFCP PHASE1:Mm9::chr5:92644371..92644380,-#_7ea9a598a3122a692ade973287b92408p1@U90926
4.9e-53FFCP PHASE1:Mm9::chr1:152012112..152012121,-#_7ea9a598a3122a692ade973287b92408p6@ENSMUST00000163840










Property "Property value" (as page type) with input value "UBPROP:0000001 "An elongated tube which carries air to and from the lungs.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003126&oldid=3277526"