Personal tools

CL:0000542: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000542
|alt_id=
|name=lymphocyte
|namespace=cell;;efo
|def="A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
|xref=BTO:0000775;;FMA:62863
|is_a=CL:0002087;;CL:0002242
|synonym=
|comment=Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)
|comment=Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)
|alt_id=
|disjoint_from=CL:0000766
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000051
|develops_from=CL:0000051
|disjoint_from=CL:0000766
|has_quality=
|has_quality=
|id=CL:0000542
|is_a=CL:0002087 ;;CL:0002242
|is_obsolete=
|located_in=
|located_in=
|name=lymphocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0000775;;FMA:62863
}}
}}

Latest revision as of 16:34, 12 September 2014

Name:lymphocyte
Namespace:FANTOM
Definition:"A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
Xrefs:
links:

BTO:0000775

FMA:62863
Comments:Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002087(nongranular leukocyte),CL:0002242(nucleate cell)
disjoint_from:CL:0000766(myeloid leukocyte)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000084 (T cell),CL:0000623 (natural killer cell),CL:0000945 (lymphocyte of B lineage),CL:0002679 (natural helper lymphocyte)
disjoint from:CL:0000451 (dendritic cell)
derives from:FF:0100773 (lymphoblastoid cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000542 (lymphocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.13e-82FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddccp5@ANXA6
2.13e-82FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddccp5@ANXA6
3.17e-82FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5p@chr11:67206142..67206156, -
3.17e-82FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5p@chr11:67206142..67206156, -
6.87e-78FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938p3@CLEC2D
6.87e-78FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938p3@CLEC2D
8.78e-77FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715p2@SIT1
8.78e-77FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715p2@SIT1
1.12e-76FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360p@chr9:140356580..140356585, +
1.12e-76FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360p@chr9:140356580..140356585, +
9.3e-76FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9acp8@IKZF3
9.3e-76FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9acp8@IKZF3
1.29e-75FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97ap3@CXCR5
1.29e-75FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97ap3@CXCR5
1.3e-75FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1ap7@IKZF3
1.3e-75FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1ap7@IKZF3
2.49e-75FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fep5@FAIM3
2.49e-75FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fep5@FAIM3
7.9e-73FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069p12@FGR
7.9e-73FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069p12@FGR
7.87e-72FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765bp1@LOC100287329
7.87e-72FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765bp1@LOC100287329
2.14e-71FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683p4@PARP2
2.14e-71FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683p4@PARP2
2.73e-71FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8p9@IKZF3
2.73e-71FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8p9@IKZF3
5.67e-71FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739p@chr8:71564073..71564104, +
5.67e-71FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739p@chr8:71564073..71564104, +
1.15e-70FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12p@chr11:64107589..64107604, -
1.15e-70FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12p@chr11:64107589..64107604, -
1.75e-70FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416p3@IKZF3
1.75e-70FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416p3@IKZF3
5.83e-70FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378dp@chr3:107844539..107844555, -
5.83e-70FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378dp@chr3:107844539..107844555, -
6.85e-70FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eedp1@TRAJ12
6.85e-70FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eedp1@TRAJ12
9.9e-70FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19p2@CU689419
9.9e-70FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19p2@CU689419
2.85e-69FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804p4@IKZF3
2.85e-69FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804p4@IKZF3
3.14e-69FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3ep4@ANXA6
3.14e-69FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3ep4@ANXA6
5.7e-69FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28p2@MAP4K1
5.7e-69FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28p2@MAP4K1
1.0e-68FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2p5@IKZF3
1.0e-68FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2p5@IKZF3
2.01e-68FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36p@chr1:207096678..207096699, +
2.01e-68FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36p@chr1:207096678..207096699, +
8.76e-68FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586p4@IKZF1
8.76e-68FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586p4@IKZF1
1.11e-67FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753p2@PTPRCAP
1.11e-67FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753p2@PTPRCAP
2.67e-67FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552p@chr4:32335511..32335532, +
2.67e-67FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552p@chr4:32335511..32335532, +
8.25e-67FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2p1@LINC00426
8.25e-67FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2p1@LINC00426
8.97e-67FFCP PHASE2:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9ap@chr18:60825437..60825471, -
8.97e-67FFCP PHASE1:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9ap@chr18:60825437..60825471, -
1.18e-66FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706p2@INTS9
1.18e-66FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706p2@INTS9
1.3e-66FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440767..123440778, +
1.3e-66FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440767..123440778, +
2.39e-66FFCP PHASE2:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31ep6@IKZF3
2.39e-66FFCP PHASE1:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31ep6@IKZF3
2.74e-66FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3cp5@ADORA2A
2.74e-66FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3cp5@ADORA2A
2.91e-66FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383bp@chr11:64107610..64107648, -
2.91e-66FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383bp@chr11:64107610..64107648, -
3.71e-66FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7bp@chr9:37037005..37037011, +
3.71e-66FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7bp@chr9:37037005..37037011, +
1.64e-65FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7dp3@RHOH
1.64e-65FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7dp3@RHOH
2.06e-65FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109p@chr6:159528034..159528048, +
2.06e-65FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109p@chr6:159528034..159528048, +
3.38e-65FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6p@chr22:50318813..50318835, +
3.38e-65FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6p@chr22:50318813..50318835, +
5.98e-65FFCP PHASE2:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7p5@ARHGAP27
5.98e-65FFCP PHASE1:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7p5@ARHGAP27
6.07e-65FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839cp@chr12:111106975..111106991, -
6.07e-65FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839cp@chr12:111106975..111106991, -
6.91e-65FFCP PHASE1:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240p2@CLEC2D
6.91e-65FFCP PHASE2:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240p2@CLEC2D
1.1e-64FFCP PHASE1:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246p1@AK128436
1.1e-64FFCP PHASE2:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246p1@AK128436
1.11e-64FFCP PHASE2:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304p@chr17:66176843..66176848, +
1.11e-64FFCP PHASE1:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304p@chr17:66176843..66176848, +
1.25e-64FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcfp@chr9:98257510..98257517, -
1.25e-64FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcfp@chr9:98257510..98257517, -
1.33e-64FFCP PHASE1:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18p@chr1:207085241..207085281, -
1.33e-64FFCP PHASE2:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18p@chr1:207085241..207085281, -
1.78e-64FFCP PHASE2:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589p1@SIT1
1.78e-64FFCP PHASE1:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589p1@SIT1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000542&oldid=3275295"