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CL:0000084

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Name:T cell
Namespace:FANTOM
Definition:"A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
Xrefs:
links:

BTO:0000782

FMA:62870
Synonyms: "immature T cell" RELATED []
"mature T cell" RELATED []
"T lymphocyte" EXACT []
"T-cell" EXACT []
"T-lymphocyte" EXACT []
Alt_id: CL:0000804
CL:0000812


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000542(lymphocyte)
disjoint_from:CL:0000623(natural killer cell),CL:0000945(lymphocyte of B lineage)
develops_from:CL:0000827(pro-T cell)



Children


is a:CL:0000789 (alpha-beta T cell),CL:0000798 (gamma-delta T cell),CL:0002419 (mature T cell),CL:0002420 (immature T cell),FF:10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL),FF:10795-110I3 (anaplastic large cell lymphoma cell line:Ki-JK)
derives from:FF:0101014 (Mo-T cell sample),FF:0102504 (T-lymphoblastic leukemia cell line sample),FF:0103212 (T-lymphoma cell line sample),FF:0103505 (T-cell chronic lymphocytic leukemia cell sample),FF:0300104 (EBF KO HPCs induced to T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000084 (T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data