CL:0000542: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=lymphocyte | |name=lymphocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:34, 12 September 2014
| Name: | lymphocyte | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149] | ||
| Xrefs: |
| ||
| Comments: | Editors note: consider adding taxon constraint to vertebrata (PMID:18025161) |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002087(nongranular leukocyte),CL:0002242(nucleate cell) |
|---|---|
| disjoint_from: | CL:0000766(myeloid leukocyte) |
| develops_from: | CL:0000051(common lymphoid progenitor) |
Children
| is a: | CL:0000084 (T cell),CL:0000623 (natural killer cell),CL:0000945 (lymphocyte of B lineage),CL:0002679 (natural helper lymphocyte) |
|---|---|
| disjoint from: | CL:0000451 (dendritic cell) |
| derives from: | FF:0100773 (lymphoblastoid cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
- 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)
- 10467-106H8
- 10474-106I6 (myeloma cell line:PCM6)
- 10476-106I8 (Burkitt's lymphoma cell line:RAJI)
... further results Mouse (Mus musculus)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10455-106G5 (acute lymphoblastic leukemia (B-ALL) cell line:BALL-1)
- 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)
- 10467-106H8
- 10474-106I6 (myeloma cell line:PCM6)
- 10476-106I8 (Burkitt's lymphoma cell line:RAJI)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000542 (lymphocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.13e-82 | FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddcc | p5@ANXA6 |
| 2.13e-82 | FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddcc | p5@ANXA6 |
| 3.17e-82 | FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5 | p@chr11:67206142..67206156, - |
| 3.17e-82 | FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5 | p@chr11:67206142..67206156, - |
| 6.87e-78 | FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938 | p3@CLEC2D |
| 6.87e-78 | FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938 | p3@CLEC2D |
| 8.78e-77 | FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715 | p2@SIT1 |
| 8.78e-77 | FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715 | p2@SIT1 |
| 1.12e-76 | FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360 | p@chr9:140356580..140356585, + |
| 1.12e-76 | FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360 | p@chr9:140356580..140356585, + |
| 9.3e-76 | FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9ac | p8@IKZF3 |
| 9.3e-76 | FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9ac | p8@IKZF3 |
| 1.29e-75 | FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97a | p3@CXCR5 |
| 1.29e-75 | FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97a | p3@CXCR5 |
| 1.3e-75 | FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1a | p7@IKZF3 |
| 1.3e-75 | FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1a | p7@IKZF3 |
| 2.49e-75 | FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fe | p5@FAIM3 |
| 2.49e-75 | FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fe | p5@FAIM3 |
| 7.9e-73 | FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069 | p12@FGR |
| 7.9e-73 | FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069 | p12@FGR |
| 7.87e-72 | FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765b | p1@LOC100287329 |
| 7.87e-72 | FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765b | p1@LOC100287329 |
| 2.14e-71 | FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683 | p4@PARP2 |
| 2.14e-71 | FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683 | p4@PARP2 |
| 2.73e-71 | FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8 | p9@IKZF3 |
| 2.73e-71 | FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8 | p9@IKZF3 |
| 5.67e-71 | FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739 | p@chr8:71564073..71564104, + |
| 5.67e-71 | FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739 | p@chr8:71564073..71564104, + |
| 1.15e-70 | FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12 | p@chr11:64107589..64107604, - |
| 1.15e-70 | FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12 | p@chr11:64107589..64107604, - |
| 1.75e-70 | FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416 | p3@IKZF3 |
| 1.75e-70 | FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416 | p3@IKZF3 |
| 5.83e-70 | FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378d | p@chr3:107844539..107844555, - |
| 5.83e-70 | FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378d | p@chr3:107844539..107844555, - |
| 6.85e-70 | FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eed | p1@TRAJ12 |
| 6.85e-70 | FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eed | p1@TRAJ12 |
| 9.9e-70 | FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19 | p2@CU689419 |
| 9.9e-70 | FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19 | p2@CU689419 |
| 2.85e-69 | FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804 | p4@IKZF3 |
| 2.85e-69 | FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804 | p4@IKZF3 |
| 3.14e-69 | FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3e | p4@ANXA6 |
| 3.14e-69 | FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3e | p4@ANXA6 |
| 5.7e-69 | FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28 | p2@MAP4K1 |
| 5.7e-69 | FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28 | p2@MAP4K1 |
| 1.0e-68 | FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2 | p5@IKZF3 |
| 1.0e-68 | FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2 | p5@IKZF3 |
| 2.01e-68 | FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36 | p@chr1:207096678..207096699, + |
| 2.01e-68 | FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36 | p@chr1:207096678..207096699, + |
| 8.76e-68 | FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586 | p4@IKZF1 |
| 8.76e-68 | FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586 | p4@IKZF1 |
| 1.11e-67 | FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753 | p2@PTPRCAP |
| 1.11e-67 | FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753 | p2@PTPRCAP |
| 2.67e-67 | FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552 | p@chr4:32335511..32335532, + |
| 2.67e-67 | FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552 | p@chr4:32335511..32335532, + |
| 8.25e-67 | FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2 | p1@LINC00426 |
| 8.25e-67 | FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2 | p1@LINC00426 |
| 8.97e-67 | FFCP PHASE2:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9a | p@chr18:60825437..60825471, - |
| 8.97e-67 | FFCP PHASE1:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9a | p@chr18:60825437..60825471, - |
| 1.18e-66 | FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706 | p2@INTS9 |
| 1.18e-66 | FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706 | p2@INTS9 |
| 1.3e-66 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr5:123440767..123440778, + |
| 1.3e-66 | FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr7:132751140..132751183, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr4:32422919..32422935, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr7:132751140..132751183, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr6:99215016..99215036, + |
| 1.3e-66 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr6:99215016..99215036, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr5:123440486..123440504, - |
| 1.3e-66 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr5:123440486..123440504, - |
| 1.3e-66 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr4:32422919..32422935, + |
| 1.3e-66 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17 | p@chr5:123440767..123440778, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31e | p6@IKZF3 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31e | p6@IKZF3 |
| 2.74e-66 | FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3c | p5@ADORA2A |
| 2.74e-66 | FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3c | p5@ADORA2A |
| 2.91e-66 | FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383b | p@chr11:64107610..64107648, - |
| 2.91e-66 | FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383b | p@chr11:64107610..64107648, - |
| 3.71e-66 | FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7b | p@chr9:37037005..37037011, + |
| 3.71e-66 | FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7b | p@chr9:37037005..37037011, + |
| 1.64e-65 | FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7d | p3@RHOH |
| 1.64e-65 | FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7d | p3@RHOH |
| 2.06e-65 | FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109 | p@chr6:159528034..159528048, + |
| 2.06e-65 | FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109 | p@chr6:159528034..159528048, + |
| 3.38e-65 | FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6 | p@chr22:50318813..50318835, + |
| 3.38e-65 | FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6 | p@chr22:50318813..50318835, + |
| 5.98e-65 | FFCP PHASE2:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7 | p5@ARHGAP27 |
| 5.98e-65 | FFCP PHASE1:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7 | p5@ARHGAP27 |
| 6.07e-65 | FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839c | p@chr12:111106975..111106991, - |
| 6.07e-65 | FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839c | p@chr12:111106975..111106991, - |
| 6.91e-65 | FFCP PHASE1:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240 | p2@CLEC2D |
| 6.91e-65 | FFCP PHASE2:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240 | p2@CLEC2D |
| 1.1e-64 | FFCP PHASE1:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246 | p1@AK128436 |
| 1.1e-64 | FFCP PHASE2:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246 | p1@AK128436 |
| 1.11e-64 | FFCP PHASE2:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304 | p@chr17:66176843..66176848, + |
| 1.11e-64 | FFCP PHASE1:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304 | p@chr17:66176843..66176848, + |
| 1.25e-64 | FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcf | p@chr9:98257510..98257517, - |
| 1.25e-64 | FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcf | p@chr9:98257510..98257517, - |
| 1.33e-64 | FFCP PHASE1:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18 | p@chr1:207085241..207085281, - |
| 1.33e-64 | FFCP PHASE2:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18 | p@chr1:207085241..207085281, - |
| 1.78e-64 | FFCP PHASE2:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589 | p1@SIT1 |
| 1.78e-64 | FFCP PHASE1:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589 | p1@SIT1 |
