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{{CL
{{CL
|id=CL:0002293
|alt_id=CL:1000459
|name=epithelial cell of thymus
|namespace=cell
|def="An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies." [FMA:72208, GOC:tfm]
|xref=FMA:72208
|is_a=CL:0002076
|synonym="epithelial cell of thymus gland" EXACT [];;"epithelial reticular cell" EXACT [];;"epithelial reticular cell of thymus" EXACT [];;"thymic epithelial cell" EXACT []
|comment=
|comment=
|alt_id=CL:1000459
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-13T02:34:22Z
|def="An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies." [FMA:72208, GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002293
|is_a=CL:0002076
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=epithelial cell of thymus
|namespace=FANTOM
|obo_creation_date=2010-09-13T02:34:22Z
|part_of=UBERON:0002370
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial cell of thymus gland" EXACT [];;"epithelial reticular cell" EXACT [];;"epithelial reticular cell of thymus" EXACT [];;"thymic epithelial cell" EXACT []
|union_of=
|xref=FMA:72208
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:epithelial cell of thymus
Namespace:FANTOM
Definition:"An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies." [FMA:72208, GOC:tfm]
Xrefs:
links:
FMA:72208
Synonyms: "epithelial cell of thymus gland" EXACT []
"epithelial reticular cell" EXACT []
"epithelial reticular cell of thymus" EXACT []
"thymic epithelial cell" EXACT []
Alt_id: CL:1000459
Created by:tmeehan
Creation date:2010-09-13T02:34:22Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002076(endo-epithelial cell)
part_of:UBERON:0002370(thymus)



Children


derives from:FF:0011508 (mouse TSt-4/DLL1 feeder cells sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002293 (epithelial cell of thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr14:112177443..112177451,-#_5d9cf891a2d63c0dded5e3db3d3a6c58p@chr14:112177443..112177451, -
1.58e-86FFCP PHASE1:Mm9::chr14:112177443..112177451,-#_5d9cf891a2d63c0dded5e3db3d3a6c58p@chr14:112177443..112177451, -
1.33e-65FFCP PHASE1:Mm9::chr6:133717427..133717432,-#_46ea9cf261c98222905b99cb7b5ff9d6p1@Gm5886
1.33e-65FFCP PHASE2:Mm9::chr6:133717427..133717432,-#_46ea9cf261c98222905b99cb7b5ff9d6p1@Gm5886
3.28e-58FFCP PHASE2:Mm9::chr14:112177430..112177435,-#_288bbfa66a3e1dbc4be8c094575f940dp@chr14:112177430..112177435, -
3.28e-58FFCP PHASE1:Mm9::chr14:112177430..112177435,-#_288bbfa66a3e1dbc4be8c094575f940dp@chr14:112177430..112177435, -
2.66e-39FFCP PHASE2:Mm9::chr18:60756420..60756422,-#_be8c3b675c479a8dd9714a33289cab88p@chr18:60756420..60756422, -
2.66e-39FFCP PHASE1:Mm9::chr18:60756420..60756422,-#_be8c3b675c479a8dd9714a33289cab88p@chr18:60756420..60756422, -
4.15e-39FFCP PHASE1:Mm9::chr10:56098964..56098995,+#_e133f338779c1eb6d6365dfb6aec0e12p8@Gja1
4.15e-39FFCP PHASE2:Mm9::chr10:56098964..56098995,+#_e133f338779c1eb6d6365dfb6aec0e12p8@Gja1
1.17e-38FFCP PHASE1:Mm9::chr16:43697176..43697178,+#_8ac2aa2ca4bb35d18e1349fc79591328p@chr16:43697176..43697178, +
1.17e-38FFCP PHASE2:Mm9::chr16:43697176..43697178,+#_8ac2aa2ca4bb35d18e1349fc79591328p@chr16:43697176..43697178, +
1.17e-38FFCP PHASE1:Mm9::chr16:25410824..25410841,+#_8ac2aa2ca4bb35d18e1349fc79591328p@chr16:25410824..25410841, +
1.17e-38FFCP PHASE2:Mm9::chr16:25410824..25410841,+#_8ac2aa2ca4bb35d18e1349fc79591328p@chr16:25410824..25410841, +
2.09e-38FFCP PHASE1:Mm9::chr9:123059977..123059986,+#_04acebc0d4390cb54d96a07103ef89d5p3@Clec3b
2.09e-38FFCP PHASE2:Mm9::chr9:123059977..123059986,+#_04acebc0d4390cb54d96a07103ef89d5p3@Clec3b
3.73e-38FFCP PHASE2:Mm9::chr16:57645189..57645193,-#_3082b814dd801336d425faa9f42ab885p@chr16:57645189..57645193, -
3.73e-38FFCP PHASE1:Mm9::chr16:57645189..57645193,-#_3082b814dd801336d425faa9f42ab885p@chr16:57645189..57645193, -
1.18e-37FFCP PHASE1:Mm9::chr2:33610787..33610805,-#_e5b57431aaf59f9886d750b0d0b02501p@chr2:33610787..33610805, -
1.18e-37FFCP PHASE2:Mm9::chr2:33610787..33610805,-#_e5b57431aaf59f9886d750b0d0b02501p@chr2:33610787..33610805, -
3.67e-34FFCP PHASE1:Mm9::chr15:42921976..42921980,-#_f7c3e2ca8ce61df04a5ad0404154605ap@chr15:42921976..42921980, -
3.67e-34FFCP PHASE1:Mm9::chr13:50513294..50513301,+#_f7c3e2ca8ce61df04a5ad0404154605ap4@Fbxw17
3.67e-34FFCP PHASE2:Mm9::chr15:42921976..42921980,-#_f7c3e2ca8ce61df04a5ad0404154605ap@chr15:42921976..42921980, -
3.67e-34FFCP PHASE2:Mm9::chr13:50513294..50513301,+#_f7c3e2ca8ce61df04a5ad0404154605ap4@Fbxw17
7.89e-34FFCP PHASE2:Mm9::chr8:30830021..30830026,+#_7a10a0dde1426986e2c32209955105dbp@chr8:30830021..30830026, +
7.89e-34FFCP PHASE1:Mm9::chr8:30830021..30830026,+#_7a10a0dde1426986e2c32209955105dbp@chr8:30830021..30830026, +
1.02e-33FFCP PHASE2:Mm9::chr17:71340057..71340067,-#_0969c048ee5e8e93dd0a811b3fa62cdbp6@Myl12b
1.02e-33FFCP PHASE1:Mm9::chr17:71340057..71340067,-#_0969c048ee5e8e93dd0a811b3fa62cdbp6@Myl12b
3.61e-33FFCP PHASE1:Mm9::chr6:117124014..117124032,+#_6a3876cbad4277f8890f3166d8d1345ep@chr6:117124014..117124032, +
3.61e-33FFCP PHASE2:Mm9::chr6:117124014..117124032,+#_6a3876cbad4277f8890f3166d8d1345ep@chr6:117124014..117124032, +
1.16e-30FFCP PHASE1:Mm9::chr15:6531079..6531094,-#_46d895574324e6fe2a0ff1766543174ap@chr15:6531079..6531094, -
1.16e-30FFCP PHASE2:Mm9::chr15:6531079..6531094,-#_46d895574324e6fe2a0ff1766543174ap@chr15:6531079..6531094, -
1.46e-30FFCP PHASE1:Mm9::chr5:34142228..34142234,+#_630180c5d06a66c3af2d28af45fd1837p@chr5:34142228..34142234, +
1.46e-30FFCP PHASE2:Mm9::chr19:61126795..61126797,+#_630180c5d06a66c3af2d28af45fd1837p@chr19:61126795..61126797, +
1.46e-30FFCP PHASE1:Mm9::chr19:61126795..61126797,+#_630180c5d06a66c3af2d28af45fd1837p@chr19:61126795..61126797, +
1.46e-30FFCP PHASE2:Mm9::chr5:34142228..34142234,+#_630180c5d06a66c3af2d28af45fd1837p@chr5:34142228..34142234, +
1.46e-30FFCP PHASE1:Mm9::chr18:43482321..43482324,-#_630180c5d06a66c3af2d28af45fd1837p8@uc008euf.1
1.46e-30FFCP PHASE2:Mm9::chr18:43482321..43482324,-#_630180c5d06a66c3af2d28af45fd1837p8@uc008euf.1
2.3e-30FFCP PHASE1:Mm9::chr9:96626390..96626394,-#_c877089d9c94709952015f634fc8be5ep@chr9:96626390..96626394, -
2.3e-30FFCP PHASE2:Mm9::chr9:96626390..96626394,-#_c877089d9c94709952015f634fc8be5ep@chr9:96626390..96626394, -
2.89e-30FFCP PHASE2:Mm9::chr18:52689547..52689558,-#_7419c0d7b1b7d82fd5618b31635f3c7cp8@Lox
2.89e-30FFCP PHASE1:Mm9::chr18:52689547..52689558,-#_7419c0d7b1b7d82fd5618b31635f3c7cp8@Lox
7.89e-30FFCP PHASE2:Mm9::chr8:17590516..17590544,+#_a40411649638339904771104e690922fp@chr8:17590516..17590544, +
7.89e-30FFCP PHASE1:Mm9::chr8:17590516..17590544,+#_a40411649638339904771104e690922fp@chr8:17590516..17590544, +
7.89e-30FFCP PHASE2:Mm9::chr2:26122852..26122853,+#_a40411649638339904771104e690922fp@chr2:26122852..26122853, +
7.89e-30FFCP PHASE1:Mm9::chr2:26122852..26122853,+#_a40411649638339904771104e690922fp@chr2:26122852..26122853, +
1.4e-29FFCP PHASE2:Mm9::chr1:127573438..127573451,+#_abc4329d1e81d77d98ef0e95fd62f6f5p5@Gpr39
1.4e-29FFCP PHASE1:Mm9::chr1:127573438..127573451,+#_abc4329d1e81d77d98ef0e95fd62f6f5p5@Gpr39
7.38e-28FFCP PHASE2:Mm9::chr3:85412245..85412258,+#_ca0c9342874d54b1edfb4543f9fd6a9ap@chr3:85412245..85412258, +
7.38e-28FFCP PHASE1:Mm9::chr16:24733721..24733736,+#_ca0c9342874d54b1edfb4543f9fd6a9ap@chr16:24733721..24733736, +
7.38e-28FFCP PHASE1:Mm9::chr3:85412245..85412258,+#_ca0c9342874d54b1edfb4543f9fd6a9ap@chr3:85412245..85412258, +
7.38e-28FFCP PHASE2:Mm9::chr16:24733721..24733736,+#_ca0c9342874d54b1edfb4543f9fd6a9ap@chr16:24733721..24733736, +
4.66e-27FFCP PHASE1:Mm9::chr17:35096529..35096537,-#_3da49894889ff484fb524ae1df28d4eep2@Hspa1b
4.66e-27FFCP PHASE1:Mm9::chr2:24192234..24192242,+#_3da49894889ff484fb524ae1df28d4eep7@Il1rn
4.66e-27FFCP PHASE2:Mm9::chr17:35096529..35096537,-#_3da49894889ff484fb524ae1df28d4eep2@Hspa1b
4.66e-27FFCP PHASE1:Mm9::chr13:113836524..113836535,-#_3da49894889ff484fb524ae1df28d4eep@chr13:113836524..113836535, -
4.66e-27FFCP PHASE2:Mm9::chr2:24192234..24192242,+#_3da49894889ff484fb524ae1df28d4eep7@Il1rn
4.66e-27FFCP PHASE2:Mm9::chr13:113836524..113836535,-#_3da49894889ff484fb524ae1df28d4eep@chr13:113836524..113836535, -
2.56e-25FFCP PHASE2:Mm9::chr16:34785003..34785021,+#_b59049e6fa2369420b1434e2f6ff434cp12@Mylk
2.56e-25FFCP PHASE1:Mm9::chr16:34785003..34785021,+#_b59049e6fa2369420b1434e2f6ff434cp12@Mylk
2.28e-24FFCP PHASE2:Mm9::chr6:117123958..117123965,+#_d86b07d86d563103806dec17ce3dd917p@chr6:117123958..117123965, +
2.28e-24FFCP PHASE1:Mm9::chr16:25865901..25865908,+#_d86b07d86d563103806dec17ce3dd917p@chr16:25865901..25865908, +
2.28e-24FFCP PHASE1:Mm9::chr7:91716821..91716828,+#_d86b07d86d563103806dec17ce3dd917p@chr7:91716821..91716828, +
2.28e-24FFCP PHASE2:Mm9::chr16:25865901..25865908,+#_d86b07d86d563103806dec17ce3dd917p@chr16:25865901..25865908, +
2.28e-24FFCP PHASE2:Mm9::chr7:91716821..91716828,+#_d86b07d86d563103806dec17ce3dd917p@chr7:91716821..91716828, +
2.28e-24FFCP PHASE1:Mm9::chr6:117123958..117123965,+#_d86b07d86d563103806dec17ce3dd917p@chr6:117123958..117123965, +
2.99e-24FFCP PHASE2:Mm9::chr14:47906833..47906835,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr14:47906833..47906835, +
2.99e-24FFCP PHASE1:Mm9::chr9:57820319..57820333,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr9:57820319..57820333, +
2.99e-24FFCP PHASE2:Mm9::chr9:57820319..57820333,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr9:57820319..57820333, +
2.99e-24FFCP PHASE2:Mm9::chr10:37035191..37035196,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr10:37035191..37035196, +
2.99e-24FFCP PHASE1:Mm9::chr14:47906833..47906835,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr14:47906833..47906835, +
2.99e-24FFCP PHASE1:Mm9::chr1:165242551..165242554,-#_c7370bd4a85e654027dc46c4e607cd5ap@chr1:165242551..165242554, -
2.99e-24FFCP PHASE2:Mm9::chr1:165242551..165242554,-#_c7370bd4a85e654027dc46c4e607cd5ap@chr1:165242551..165242554, -
2.99e-24FFCP PHASE1:Mm9::chr19:34325562..34325568,-#_c7370bd4a85e654027dc46c4e607cd5ap@chr19:34325562..34325568, -
2.99e-24FFCP PHASE2:Mm9::chr18:52718847..52718852,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr18:52718847..52718852, +
2.99e-24FFCP PHASE1:Mm9::chr18:52718847..52718852,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr18:52718847..52718852, +
2.99e-24FFCP PHASE2:Mm9::chr19:34325562..34325568,-#_c7370bd4a85e654027dc46c4e607cd5ap@chr19:34325562..34325568, -
2.99e-24FFCP PHASE1:Mm9::chr10:37035191..37035196,+#_c7370bd4a85e654027dc46c4e607cd5ap@chr10:37035191..37035196, +
5.11e-24FFCP PHASE1:Mm9::chr1:135811991..135811998,-#_9364a99bca86b0ae3f3011f6d79ecb94p@chr1:135811991..135811998, -
5.11e-24FFCP PHASE2:Mm9::chr15:102809727..102809760,-#_9364a99bca86b0ae3f3011f6d79ecb94p@chr15:102809727..102809760, -
5.11e-24FFCP PHASE2:Mm9::chr1:135811991..135811998,-#_9364a99bca86b0ae3f3011f6d79ecb94p@chr1:135811991..135811998, -
5.11e-24FFCP PHASE1:Mm9::chr15:102809727..102809760,-#_9364a99bca86b0ae3f3011f6d79ecb94p@chr15:102809727..102809760, -
8.72e-24FFCP PHASE2:Mm9::chr15:43002499..43002541,-#_12df956fcd849191b7cc697166e5d83fp4@Rspo2
8.72e-24FFCP PHASE1:Mm9::chr3:86343806..86343829,+#_12df956fcd849191b7cc697166e5d83fp@chr3:86343806..86343829, +
8.72e-24FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_12df956fcd849191b7cc697166e5d83fp@chr11:43827555..43827566, +
8.72e-24FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_12df956fcd849191b7cc697166e5d83fp@chr11:43827555..43827566, +
8.72e-24FFCP PHASE2:Mm9::chr3:86343806..86343829,+#_12df956fcd849191b7cc697166e5d83fp@chr3:86343806..86343829, +
8.72e-24FFCP PHASE1:Mm9::chr15:43002499..43002541,-#_12df956fcd849191b7cc697166e5d83fp4@Rspo2
1.19e-23FFCP PHASE2:Mm9::chr1:85196170..85196197,+#_2e57cf6d64457072dc927ac52214d867p1@Gm7609
1.19e-23FFCP PHASE2:Mm9::chr16:14705746..14705761,+#_2e57cf6d64457072dc927ac52214d867p4@Snai2
1.19e-23FFCP PHASE1:Mm9::chr1:85196170..85196197,+#_2e57cf6d64457072dc927ac52214d867p1@Gm7609
1.19e-23FFCP PHASE1:Mm9::chr6:92868061..92868079,-#_2e57cf6d64457072dc927ac52214d867p@chr6:92868061..92868079, -
1.19e-23FFCP PHASE2:Mm9::chr6:92868061..92868079,-#_2e57cf6d64457072dc927ac52214d867p@chr6:92868061..92868079, -
1.19e-23FFCP PHASE1:Mm9::chr16:14705746..14705761,+#_2e57cf6d64457072dc927ac52214d867p4@Snai2
1.69e-23FFCP PHASE1:Mm9::chr3:151500392..151500405,-#_c16701947e615e6c77e4f709898095f3p2@Ptgfr
1.69e-23FFCP PHASE2:Mm9::chr3:151500392..151500405,-#_c16701947e615e6c77e4f709898095f3p2@Ptgfr
1.1e-22FFCP PHASE2:Mm9::chr11:104304820..104304832,-#_eb97b163343f5b05759cce4ab7fb3a3cp@chr11:104304820..104304832, -
1.1e-22FFCP PHASE1:Mm9::chr11:104304820..104304832,-#_eb97b163343f5b05759cce4ab7fb3a3cp@chr11:104304820..104304832, -
4.98e-22FFCP PHASE1:Mm9::chr15:42967592..42967594,-#_27b2dd4ca4e8778ae14f80f3e62a3e35p@chr15:42967592..42967594, -
4.98e-22FFCP PHASE2:Mm9::chr15:42967592..42967594,-#_27b2dd4ca4e8778ae14f80f3e62a3e35p@chr15:42967592..42967594, -

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