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UBERON:0002370

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Name:thymus
Namespace:FANTOM
Definition:"Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
Xrefs:
links:

AAO:0010548
BTO:0001374
EFO:0000860
EHDAA2:0002017
EHDAA:9119
EMAPA:18768
EV:0100138
FMA:9607
GAID:464
[1]
[2]
MA:0000142
MAT:0000080
MESH:A.06.407.850
MIAA:0000080
ncithesaurus:Thymus_Gland
OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
SCTID:118507000
TAO:0001078
VHOG:0000253
XAO:0000163

ZFA:0001078
Synonyms: "thymus gland" EXACT []
Comments:check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
Alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0002368(endocrine gland),UBERON:0004177(hemopoietic organ),UBERON:0005057(immune organ),UBERON:0005058(hemolymphoid system gland)
develops_from:UBERON:0005562(thymus primordium)
part_of:UBERON:0000949(endocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0009113(thymic region)



Children

derives from:FF:0010027 (thymus - adult human sample),FF:0010043 (human thymus - fetal sample),FF:0011280 (mouse thymus- neonate N02 sample),FF:0011304 (mouse thymus- neonate N03 sample),FF:0011329 (mouse thymus- adult sample),FF:0011336 (mouse thymus- embryo E14 sample),FF:0011346 (mouse thymus- embryo E15 sample),FF:0011355 (mouse thymus- embryo E16 sample),FF:0011366 (mouse thymus- embryo E17 sample),FF:0011401 (mouse thymus- neonate N06 sample),FF:0011407 (mouse thymus- neonate N07 sample),FF:0011413 (mouse thymus- neonate N10 sample),FF:0011426 (mouse thymus- neonate N20 sample),FF:0011496 (mouse thymus- neonate N25 sample),FF:0011497 (mouse thymus- neonate N30 sample),FF:0011516 (mouse thymus- embryo E18 sample),FF:0101455 (thymic carcinoma cell sample)
part of:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000893 (thymocyte),CL:0000894 (DN1 thymic pro-T cell),CL:0002293 (epithelial cell of thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002370 (thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.