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{{CL
{{CL
|id=CL:0002320
|alt_id=CL:1000406
|name=connective tissue cell
|namespace=cell
|def="A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone." [GOC:tfm, ISBN:0618947256]
|xref=FMA:63875
|is_a=CL:0000548;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=CL:1000406
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-15T03:01:54Z
|def="A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone." [GOC:tfm, ISBN:0618947256]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002320
|is_a=CL:0000548 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=connective tissue cell
|namespace=FANTOM
|obo_creation_date=2010-09-15T03:01:54Z
|part_of=UBERON:0002384
|part_of=UBERON:0002384
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=FMA:63875
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:connective tissue cell
Namespace:FANTOM
Definition:"A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone." [GOC:tfm, ISBN:0618947256]
Xrefs:
links:
FMA:63875
Alt_id: CL:1000406
Created by:tmeehan
Creation date:2010-09-15T03:01:54Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000548(animal cell),CL:0002371(somatic cell)
part_of:UBERON:0002384(connective tissue)



Children


is a:CL:0000057 (fibroblast),CL:0000058 (chondroblast),CL:0000062 (osteoblast),CL:0000134 (mesenchymal cell),CL:0000136 (fat cell),CL:0000137 (osteocyte),CL:0000499 (stromal cell),CL:0000669 (pericyte cell),CL:0002503 (adventitial cell),CL:0002564 (nucleus pulposus cell of intervertebral disc),CL:0002576 (perineural cell),CL:0002602 (annulus pulposus cell),CL:1000500 (kidney interstitial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002320 (connective tissue cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.98e-45FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_d180ece84562a6944ea84ff7a55490a8p1@DOK1
4.98e-45FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_d180ece84562a6944ea84ff7a55490a8p1@DOK1
5.83e-45FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_dfa50698fc59d10a2c0a99314f03535dp2@EMP3
5.83e-45FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_dfa50698fc59d10a2c0a99314f03535dp2@EMP3
1.32e-44FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_0556be6ad3149191480df5be5418f65fp4@ROCK1
1.32e-44FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_0556be6ad3149191480df5be5418f65fp4@ROCK1
1.65e-44FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_7d5bc7215d4a38c829b9c33220a49f0ep2@ITGA4
1.65e-44FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_7d5bc7215d4a38c829b9c33220a49f0ep2@ITGA4
3.0e-40FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_417b2bc6f78e991547c9d3b0f33839a4p2@CLIC1
3.0e-40FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_417b2bc6f78e991547c9d3b0f33839a4p2@CLIC1
8.81e-40FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_ebe7e874fc30c97e3297531832f52778p1@ARSB
8.81e-40FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_ebe7e874fc30c97e3297531832f52778p1@ARSB
2.65e-39FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_068d8321549efaa677b03ef44e2941bdp1@ADCY7
2.65e-39FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_068d8321549efaa677b03ef44e2941bdp1@ADCY7
1.03e-37FFCP PHASE1:Hg19::chr1:153518270..153518290,-#_aabfa8030a94fab686f7625186806344p1@S100A4
1.03e-37FFCP PHASE2:Hg19::chr1:153518270..153518290,-#_aabfa8030a94fab686f7625186806344p1@S100A4
2.57e-37FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_157190ee3f86b82280b26097dd4548eap1@ADPGK
2.57e-37FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_157190ee3f86b82280b26097dd4548eap1@ADPGK
2.86e-36FFCP PHASE2:Mm9::chr7:26474167..26474188,-#_9ace93615f340db719e33dd2bebd294ap@chr7:26474167..26474188, -
2.86e-36FFCP PHASE1:Mm9::chr7:26474167..26474188,-#_9ace93615f340db719e33dd2bebd294ap@chr7:26474167..26474188, -
3.34e-36FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_823809d3d6c521bbcd11d3f0e7bc28e9p3@EMP3
3.34e-36FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_823809d3d6c521bbcd11d3f0e7bc28e9p3@EMP3
6.92e-36FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_f5579569789e8e17bfcd60a6f19dfb12p1@ITGA4
6.92e-36FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_f5579569789e8e17bfcd60a6f19dfb12p1@ITGA4
8.31e-36FFCP PHASE2:Hg19::chr12:44152740..44152815,+#_bee9d87187bb48502e68ba04e76ce22bp1@IRAK4
8.31e-36FFCP PHASE1:Hg19::chr12:44152740..44152815,+#_bee9d87187bb48502e68ba04e76ce22bp1@IRAK4
3.07e-35FFCP PHASE2:Hg19::chrX:117629766..117629846,+#_67b5a29735225a412f60dc3adefc7d03p1@DOCK11
3.07e-35FFCP PHASE1:Hg19::chrX:117629766..117629846,+#_67b5a29735225a412f60dc3adefc7d03p1@DOCK11
4.38e-35FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_c11fc27590737592d4bdcab091dd5c8ap2@SEC22B
4.38e-35FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_c11fc27590737592d4bdcab091dd5c8ap2@SEC22B
5.5e-35FFCP PHASE2:Hg19::chr2:197036289..197036314,-#_638c1580a4c60c057df76493225696bep1@STK17B
5.5e-35FFCP PHASE1:Hg19::chr2:197036289..197036314,-#_638c1580a4c60c057df76493225696bep1@STK17B
5.64e-35FFCP PHASE2:Hg19::chr13:41635029..41635044,-#_28635ae7b5eda3c6112ff3fbb4c9ad75p4@ELF1
5.64e-35FFCP PHASE1:Hg19::chr13:41635029..41635044,-#_28635ae7b5eda3c6112ff3fbb4c9ad75p4@ELF1
5.89e-35FFCP PHASE2:Hg19::chr12:123920991..123921047,-#_356896fb2ed7175405d03060c2d5e87ep1@RILPL2
5.89e-35FFCP PHASE1:Hg19::chr12:123920991..123921047,-#_356896fb2ed7175405d03060c2d5e87ep1@RILPL2
6.88e-35FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_1b43a18bc0b079dcc34b829caf49365cp1@ACTR3
6.88e-35FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_1b43a18bc0b079dcc34b829caf49365cp1@ACTR3
1.15e-33FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_fa6395ba7aca545fa0e09d6d109e70cdp2@RASSF1
1.15e-33FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_fa6395ba7aca545fa0e09d6d109e70cdp2@RASSF1
2.75e-33FFCP PHASE2:Hg19::chr2:197036269..197036287,-#_f22af9c8e49e284870364e80a9886532p2@STK17B
2.75e-33FFCP PHASE1:Hg19::chr2:197036269..197036287,-#_f22af9c8e49e284870364e80a9886532p2@STK17B
4.06e-33FFCP PHASE2:Hg19::chr10:26727647..26727722,+#_029aae2e9774901262f137b4c088d8dap2@APBB1IP
4.06e-33FFCP PHASE1:Hg19::chr10:26727647..26727722,+#_029aae2e9774901262f137b4c088d8dap2@APBB1IP
5.24e-33FFCP PHASE2:Mm9::chr4:140255879..140255890,+#_1915b80e409e6178f3baedacb872ce36p@chr4:140255879..140255890, +
5.24e-33FFCP PHASE1:Mm9::chr4:140255879..140255890,+#_1915b80e409e6178f3baedacb872ce36p@chr4:140255879..140255890, +
5.55e-33FFCP PHASE1:Hg19::chr3:5229382..5229408,+#_b9b26edd932897ff0d76a1aa3569b780p1@EDEM1
5.55e-33FFCP PHASE2:Hg19::chr3:5229382..5229408,+#_b9b26edd932897ff0d76a1aa3569b780p1@EDEM1
7.3e-33FFCP PHASE1:Hg19::chr17:56415424..56415454,-#_5ef0b6d471f8ddca3d60f14f5ce19bf5p@chr17:56415424..56415454, -
7.3e-33FFCP PHASE2:Hg19::chr17:56415424..56415454,-#_5ef0b6d471f8ddca3d60f14f5ce19bf5p@chr17:56415424..56415454, -
8.6e-33FFCP PHASE2:Hg19::chr10:18948026..18948051,-#_85450f92223e7bc8252ce2965d78ac83p1@BC033534
8.6e-33FFCP PHASE1:Hg19::chr10:18948026..18948051,-#_85450f92223e7bc8252ce2965d78ac83p1@BC033534
1.5e-32FFCP PHASE1:Hg19::chr2:68592394..68592405,+#_e99f464f29b6e8b78365b9f947441b64p2@PLEK
1.5e-32FFCP PHASE2:Hg19::chr2:68592394..68592405,+#_e99f464f29b6e8b78365b9f947441b64p2@PLEK
2.85e-32FFCP PHASE1:Hg19::chr13:41593405..41593416,-#_565e7f9c3739fe188246b01fb7e081dap9@ELF1
2.85e-32FFCP PHASE2:Hg19::chr13:41593405..41593416,-#_565e7f9c3739fe188246b01fb7e081dap9@ELF1
3.28e-32FFCP PHASE1:Hg19::chr19:48828539..48828550,+#_08153ff66a6938289aa7e829332c2ecap4@EMP3
3.28e-32FFCP PHASE2:Hg19::chr19:48828539..48828550,+#_08153ff66a6938289aa7e829332c2ecap4@EMP3
1.22e-31FFCP PHASE2:Hg19::chr8:121824235..121824275,-#_f3be4b792418d436301191e9ef429b2ap1@SNTB1
1.22e-31FFCP PHASE1:Hg19::chr8:121824235..121824275,-#_f3be4b792418d436301191e9ef429b2ap1@SNTB1
1.62e-31FFCP PHASE1:Hg19::chr14:95982953..95982999,-#_6ac998845fcfc18149ae09a7ed5158cfp@chr14:95982953..95982999, -
1.62e-31FFCP PHASE2:Hg19::chr14:95982953..95982999,-#_6ac998845fcfc18149ae09a7ed5158cfp@chr14:95982953..95982999, -
1.76e-31FFCP PHASE1:Mm9::chr1:175560978..175561013,+#_2e59e511b86082281b717a4068a266ecp1@Pyhin1
1.76e-31FFCP PHASE2:Mm9::chr1:175560978..175561013,+#_2e59e511b86082281b717a4068a266ecp1@Pyhin1
1.95e-31FFCP PHASE1:Hg19::chrX:19905661..19905699,-#_752e758889753db382d8ead5199873dbp1@SH3KBP1
1.95e-31FFCP PHASE2:Hg19::chrX:19905661..19905699,-#_752e758889753db382d8ead5199873dbp1@SH3KBP1
2.0e-31FFCP PHASE2:Hg19::chr17:16319083..16319126,+#_028ee23519eafff9eb9296d0c9516505p2@TRPV2
2.0e-31FFCP PHASE1:Hg19::chr17:16319083..16319126,+#_028ee23519eafff9eb9296d0c9516505p2@TRPV2
3.22e-31FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_80cf323e4fa4b463d7331e52d4bcd9c2p@chr2:192542577..192542595, -
3.22e-31FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_80cf323e4fa4b463d7331e52d4bcd9c2p@chr2:192542577..192542595, -
3.83e-31FFCP PHASE2:Hg19::chr3:15837528..15837578,-#_4f298c46b4752b144badc1bb3b290a6dp@chr3:15837528..15837578, -
3.83e-31FFCP PHASE1:Hg19::chr3:15837528..15837578,-#_4f298c46b4752b144badc1bb3b290a6dp@chr3:15837528..15837578, -
6.88e-31FFCP PHASE2:Mm9::chr3:60407657..60407673,+#_389b2bdd23f337446ddace8719e0c7abp@chr3:60407657..60407673, +
6.88e-31FFCP PHASE1:Mm9::chr3:60407657..60407673,+#_389b2bdd23f337446ddace8719e0c7abp@chr3:60407657..60407673, +
7.86e-31FFCP PHASE2:Hg19::chr4:80994619..80994633,-#_4107e149e6ae90de78c910f873ba6a91p6@ANTXR2
7.86e-31FFCP PHASE1:Hg19::chr4:80994619..80994633,-#_4107e149e6ae90de78c910f873ba6a91p6@ANTXR2
9.65e-31FFCP PHASE2:Hg19::chr17:16319065..16319082,+#_4728b8ad5765df518b4fea780f0a3f9ap4@TRPV2
9.65e-31FFCP PHASE1:Hg19::chr17:16319065..16319082,+#_4728b8ad5765df518b4fea780f0a3f9ap4@TRPV2
1.37e-30FFCP PHASE1:Hg19::chr13:100153737..100153785,+#_e2020f72f8aeb59b37742f4d5bba6540p1@TM9SF2
1.37e-30FFCP PHASE2:Hg19::chr13:100153737..100153785,+#_e2020f72f8aeb59b37742f4d5bba6540p1@TM9SF2
1.4e-30FFCP PHASE2:Hg19::chr2:182322344..182322359,+#_cfa8280796254533ce5ccdd22bcafa4ep6@ITGA4
1.4e-30FFCP PHASE1:Hg19::chr2:182322344..182322359,+#_cfa8280796254533ce5ccdd22bcafa4ep6@ITGA4
1.69e-30FFCP PHASE1:Hg19::chr10:70847852..70847873,+#_551bf7e09a4a8321c1cc574b7616f58dp1@SRGN
1.69e-30FFCP PHASE2:Hg19::chr10:70847852..70847873,+#_551bf7e09a4a8321c1cc574b7616f58dp1@SRGN
1.94e-30FFCP PHASE1:Hg19::chr10:98480301..98480315,-#_eae70a7b4c9eca52300a65914eceeaaep3@PIK3AP1
1.94e-30FFCP PHASE2:Hg19::chr10:98480301..98480315,-#_eae70a7b4c9eca52300a65914eceeaaep3@PIK3AP1
2.14e-30FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_acaa61eb85e63cd3b9fa83d487ecbdd2p1@SLC17A9
2.14e-30FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_acaa61eb85e63cd3b9fa83d487ecbdd2p1@SLC17A9
3.69e-30FFCP PHASE2:Hg19::chr5:42950949..42951013,+#_97718fc9bd96c0d9c4b2c78c814f94cep@chr5:42950949..42951013, +
3.69e-30FFCP PHASE1:Hg19::chr5:42950949..42951013,+#_97718fc9bd96c0d9c4b2c78c814f94cep@chr5:42950949..42951013, +
3.76e-30FFCP PHASE2:Hg19::chr11:67806467..67806527,+#_140f2639f37d867c0b17955335e586f0p1@TCIRG1
3.76e-30FFCP PHASE1:Hg19::chr11:67806467..67806527,+#_140f2639f37d867c0b17955335e586f0p1@TCIRG1
4.34e-30FFCP PHASE1:Hg19::chr13:41593392..41593403,-#_35baedcab2ccaffc743908f992dea909p7@ELF1
4.34e-30FFCP PHASE2:Hg19::chr13:41593392..41593403,-#_35baedcab2ccaffc743908f992dea909p7@ELF1
4.67e-30FFCP PHASE2:Mm9::chr17:84587077..84587097,-#_fd220c117169669040249a27195747eap4@Zfp36l2
4.67e-30FFCP PHASE1:Mm9::chr17:84587077..84587097,-#_fd220c117169669040249a27195747eap4@Zfp36l2
6.1e-30FFCP PHASE2:Hg19::chr18:3449527..3449582,+#_fafac4925bef45b79fab07d19537285ap6@TGIF1
6.1e-30FFCP PHASE1:Hg19::chr18:3449527..3449582,+#_fafac4925bef45b79fab07d19537285ap6@TGIF1
1.63e-29FFCP PHASE2:Hg19::chr5:169724839..169724855,-#_795251c2ade73ec6bd659204e8d083acp3@LCP2
1.63e-29FFCP PHASE1:Hg19::chr5:169724839..169724855,-#_795251c2ade73ec6bd659204e8d083acp3@LCP2

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