CL:0002504: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A smooth muscle cell of the intestine." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002504 | |||
|is_a=CL:0000192 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=enteric smooth muscle cell | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-01-17T03:39:38Z | |||
|part_of=UBERON:0000160 | |part_of=UBERON:0000160 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym="intestinal smooth muscle cell" EXACT [] | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:43, 12 September 2014
| Name: | enteric smooth muscle cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A smooth muscle cell of the intestine." [GOC:tfm] |
| Synonyms: | "intestinal smooth muscle cell" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2011-01-17T03:39:38Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000192(smooth muscle cell) |
|---|---|
| part_of: | UBERON:0000160(intestine) |
Children
| is a: | CL:1000279 (smooth muscle cell of large intestine) |
|---|---|
| derives from: | FF:0000180 (human smooth muscle cell of intestine sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
- 11509-119G6 (Smooth Muscle Cells - Intestinal, donor1)
- 11589-120G5
- 11670-122G5
Mouse (Mus musculus)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
- 11509-119G6 (Smooth Muscle Cells - Intestinal, donor1)
- 11589-120G5
- 11670-122G5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002504 (enteric smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_6544bc9c008a583468edb14931e4af8d | p3@ENST00000546390, p3@uc009zme.1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_6544bc9c008a583468edb14931e4af8d | p3@ENST00000546390, p3@uc009zme.1 |
| 1.11e-98 | FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_69217d0ee95f57fbd95adc2848d1aed0 | p1@ENST00000435177 |
| 1.11e-98 | FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_69217d0ee95f57fbd95adc2848d1aed0 | p1@ENST00000435177 |
| 4.71e-66 | FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_5c807a4dd41278525d45ae16535a26ae | p2@ENST00000546390, p2@uc009zme.1 |
| 4.71e-66 | FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_5c807a4dd41278525d45ae16535a26ae | p2@ENST00000546390, p2@uc009zme.1 |
| 7.24e-50 | FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_8227532eaf4a0f897cc2375503a33d13 | p1@ENST00000450500 |
| 7.24e-50 | FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_8227532eaf4a0f897cc2375503a33d13 | p1@ENST00000450500 |
| 6.47e-47 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_b2b36393e573678e8f30b2d01fc5e2c1 | p@chr13:94958134..94958164, + |
| 6.47e-47 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_b2b36393e573678e8f30b2d01fc5e2c1 | p@chr13:94958134..94958164, + |
| 8.55e-40 | FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_225e6ce2f856f89357c3260bdab33c8c | p1@ENST00000416758 |
| 8.55e-40 | FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_225e6ce2f856f89357c3260bdab33c8c | p1@ENST00000416758 |
| 9.77e-40 | FFCP PHASE2:Hg19::chr16:86229885..86229905,+#_4cfa2b253bc5de5669b8ef4da2e5d302 | p@chr16:86229885..86229905, + |
| 9.77e-40 | FFCP PHASE1:Hg19::chr16:86229885..86229905,+#_4cfa2b253bc5de5669b8ef4da2e5d302 | p@chr16:86229885..86229905, + |
| 2.95e-37 | FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_5e3d628caff05a8e9b7f957032a14bf3 | p@chr16:86229916..86229943, + |
| 2.95e-37 | FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_5e3d628caff05a8e9b7f957032a14bf3 | p@chr16:86229916..86229943, + |
| 9.1e-34 | FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_43e85a8a677c5420f4dbbd6d2b1379a8 | p@chr6:31304866..31304870, - |
| 9.1e-34 | FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_43e85a8a677c5420f4dbbd6d2b1379a8 | p@chr6:31304866..31304870, - |
| 4.53e-30 | FFCP PHASE2:Hg19::chr8:120079398..120079416,+#_a7c202706066b0aff7044a51586d748f | p3@COLEC10 |
| 4.53e-30 | FFCP PHASE1:Hg19::chr8:120079398..120079416,+#_a7c202706066b0aff7044a51586d748f | p3@COLEC10 |
| 4.07e-27 | FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_0a9875faa01045f80b092bb86f9de9e8 | p6@TCF21 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_0a9875faa01045f80b092bb86f9de9e8 | p6@TCF21 |
| 7.88e-27 | FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_94730d7ab93bfb99fad6356d3417cb13 | p@chr18:77557973..77557984, + |
| 7.88e-27 | FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_94730d7ab93bfb99fad6356d3417cb13 | p@chr18:77557973..77557984, + |
| 5.75e-26 | FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_f284a682350f71962479c89653cf2fa6 | p@chr1:78401534..78401545, + |
| 5.75e-26 | FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_f284a682350f71962479c89653cf2fa6 | p@chr1:78401534..78401545, + |
| 2.34e-25 | FFCP PHASE2:Hg19::chr15:50149374..50149385,+#_56e23b3d06cbea01f59a84e1a18d4b38 | p@chr15:50149374..50149385, + |
| 2.34e-25 | FFCP PHASE1:Hg19::chr15:50149374..50149385,+#_56e23b3d06cbea01f59a84e1a18d4b38 | p@chr15:50149374..50149385, + |
| 2.64e-25 | FFCP PHASE2:Hg19::chr3:150966773..150966784,-#_0ba0b2b434e04c096e166721903f8d5a | p7@P2RY14 |
| 2.64e-25 | FFCP PHASE1:Hg19::chr3:150966773..150966784,-#_0ba0b2b434e04c096e166721903f8d5a | p7@P2RY14 |
| 2.64e-25 | FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_0ba0b2b434e04c096e166721903f8d5a | p@chr7:136759435..136759447, + |
| 2.64e-25 | FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_0ba0b2b434e04c096e166721903f8d5a | p@chr7:136759435..136759447, + |
| 6.22e-25 | FFCP PHASE2:Hg19::chr5:10237680..10237685,+#_cd908fc965c7dafe7f3d4faf436bba00 | p@chr5:10237680..10237685, + |
| 6.22e-25 | FFCP PHASE1:Hg19::chr5:10237680..10237685,+#_cd908fc965c7dafe7f3d4faf436bba00 | p@chr5:10237680..10237685, + |
| 3.62e-24 | FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_226d24982038a2c585304015d94e577e | p18@SPON2 |
| 3.62e-24 | FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_226d24982038a2c585304015d94e577e | p18@SPON2 |
| 5.35e-24 | FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_6458ca5ac80c3b7a57b72ae3fd004298 | p@chr16:86229728..86229756, + |
| 5.35e-24 | FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_6458ca5ac80c3b7a57b72ae3fd004298 | p@chr16:86229728..86229756, + |
| 1.88e-23 | FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1631fd41c0ec9787d23a0af37d2b163b | p9@P2RY14 |
| 1.88e-23 | FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1631fd41c0ec9787d23a0af37d2b163b | p9@P2RY14 |
| 2.62e-23 | FFCP PHASE2:Hg19::chr8:109482025..109482032,+#_ba0e12e26788c7fb148c7ca32f63cbf0 | p@chr8:109482025..109482032, + |
| 2.62e-23 | FFCP PHASE1:Hg19::chr8:109482025..109482032,+#_ba0e12e26788c7fb148c7ca32f63cbf0 | p@chr8:109482025..109482032, + |
| 3.09e-23 | FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_b2bb03ef6702ebe05aef2841ad104785 | p15@PDE5A |
| 3.09e-23 | FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_b2bb03ef6702ebe05aef2841ad104785 | p15@PDE5A |
| 4.66e-22 | FFCP PHASE2:Hg19::chr9:113137742..113137746,-#_9ec51ce9b94558722b4fe47202504c42 | p@chr9:113137742..113137746, - |
| 4.66e-22 | FFCP PHASE1:Hg19::chr9:113137742..113137746,-#_9ec51ce9b94558722b4fe47202504c42 | p@chr9:113137742..113137746, - |
| 1.59e-21 | FFCP PHASE2:Hg19::chr3:150966697..150966714,-#_be930b8efde7a5888ac2e0453616397a | p8@P2RY14 |
| 1.59e-21 | FFCP PHASE1:Hg19::chr3:150966697..150966714,-#_be930b8efde7a5888ac2e0453616397a | p8@P2RY14 |
| 1.76e-21 | FFCP PHASE2:Hg19::chr3:150966861..150966873,-#_ab7ffd41c76fe711a4f82a69d73c23f7 | p6@P2RY14 |
| 1.76e-21 | FFCP PHASE1:Hg19::chr3:150966861..150966873,-#_ab7ffd41c76fe711a4f82a69d73c23f7 | p6@P2RY14 |
| 2.67e-21 | FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_701319d14a92c275dfe23b3d4c23f411 | p@chr18:77557932..77557943, + |
| 2.67e-21 | FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_701319d14a92c275dfe23b3d4c23f411 | p@chr18:77557932..77557943, + |
| 5.41e-21 | FFCP PHASE2:Hg19::chr1:246151834..246151867,-#_a1bd87d7b99572b40b17d89b1caa1439 | p4@SMYD3 |
| 5.41e-21 | FFCP PHASE1:Hg19::chr1:246151834..246151867,-#_a1bd87d7b99572b40b17d89b1caa1439 | p4@SMYD3 |
| 7.12e-21 | FFCP PHASE1:Hg19::chr5:52096217..52096226,+#_8c1c429c71a78fd82d823ae6b0e865fe | p11@PELO |
| 7.12e-21 | FFCP PHASE2:Hg19::chr5:52096217..52096226,+#_8c1c429c71a78fd82d823ae6b0e865fe | p11@PELO |
| 7.42e-21 | FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_7d1f151fd4b51858a79e09a019444ec2 | p4@BRIX1 |
| 7.42e-21 | FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_7d1f151fd4b51858a79e09a019444ec2 | p4@BRIX1 |
| 1.07e-20 | FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_27534de31e6e01b0cfb3c2b8104a234d | p2@COLEC10 |
| 1.07e-20 | FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_27534de31e6e01b0cfb3c2b8104a234d | p2@COLEC10 |
| 5.27e-20 | FFCP PHASE2:Hg19::chr6:134210095..134210147,-#_af1eca78712bf017aeb7142b4acaab7a | p1@uc003qeg.1 |
| 5.27e-20 | FFCP PHASE1:Hg19::chr6:134210095..134210147,-#_af1eca78712bf017aeb7142b4acaab7a | p1@uc003qeg.1 |
| 6.54e-20 | FFCP PHASE2:Hg19::chr9:118701892..118701903,+#_a2cd42955206c18ebd425b7b76781d1d | p@chr9:118701892..118701903, + |
| 6.54e-20 | FFCP PHASE1:Hg19::chr9:118701892..118701903,+#_a2cd42955206c18ebd425b7b76781d1d | p@chr9:118701892..118701903, + |
| 8.67e-20 | FFCP PHASE2:Hg19::chr15:50193489..50193500,-#_b9e7debc179e7615eb3331671ad3e2e3 | p@chr15:50193489..50193500, - |
| 8.67e-20 | FFCP PHASE1:Hg19::chr15:50193489..50193500,-#_b9e7debc179e7615eb3331671ad3e2e3 | p@chr15:50193489..50193500, - |
| 6.34e-19 | FFCP PHASE1:Hg19::chr9:118701819..118701835,+#_02fd0aa11ec3a02490ab0a0aa22f7933 | p@chr9:118701819..118701835, + |
| 6.34e-19 | FFCP PHASE2:Hg19::chr9:118701819..118701835,+#_02fd0aa11ec3a02490ab0a0aa22f7933 | p@chr9:118701819..118701835, + |
| 2.53e-18 | FFCP PHASE2:Hg19::chr7:150574212..150574225,-#_d7667a9354c0690177283c905ed43a13 | p@chr7:150574212..150574225, - |
| 2.53e-18 | FFCP PHASE1:Hg19::chr7:150574212..150574225,-#_d7667a9354c0690177283c905ed43a13 | p@chr7:150574212..150574225, - |
| 2.81e-18 | FFCP PHASE2:Hg19::chr1:246023808..246023820,-#_76f0b900112bbb0efd2922f2bb2eda20 | p@chr1:246023808..246023820, - |
| 2.81e-18 | FFCP PHASE1:Hg19::chr1:246023808..246023820,-#_76f0b900112bbb0efd2922f2bb2eda20 | p@chr1:246023808..246023820, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_01a93bb6c809bd1f0605d767059bd6c5 | p@chr4:120546882..120546885, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr10:62677334..62677342,-#_01a93bb6c809bd1f0605d767059bd6c5 | p@chr10:62677334..62677342, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr10:62677334..62677342,-#_01a93bb6c809bd1f0605d767059bd6c5 | p@chr10:62677334..62677342, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_01a93bb6c809bd1f0605d767059bd6c5 | p@chr4:120546882..120546885, - |
| 1.21e-17 | FFCP PHASE2:Hg19::chr11:19441234..19441247,+#_9457db834d949280b03b01c9fbdba43c | p@chr11:19441234..19441247, + |
| 1.21e-17 | FFCP PHASE1:Hg19::chr11:19441234..19441247,+#_9457db834d949280b03b01c9fbdba43c | p@chr11:19441234..19441247, + |
| 1.51e-17 | FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_c9f655f90e48674e69eb59559da600d6 | p@chr15:80800274..80800278, - |
| 1.51e-17 | FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_c9f655f90e48674e69eb59559da600d6 | p@chr15:80800274..80800278, - |
| 2.0e-17 | FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_e62df3992ff352ffc55293f58c6cb199 | p@chr1:31842256..31842273, + |
| 2.0e-17 | FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_e62df3992ff352ffc55293f58c6cb199 | p@chr1:31842256..31842273, + |
| 2.07e-17 | FFCP PHASE2:Hg19::chr18:77557948..77557968,+#_1aa6046722d39ea76934525660be1b91 | p@chr18:77557948..77557968, + |
| 2.07e-17 | FFCP PHASE1:Hg19::chr18:77557948..77557968,+#_1aa6046722d39ea76934525660be1b91 | p@chr18:77557948..77557968, + |
| 3.48e-17 | FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_3ec209b4d4de47f7d48fe5c2a36a8227 | p15@SPON2 |
| 3.48e-17 | FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_3ec209b4d4de47f7d48fe5c2a36a8227 | p15@SPON2 |
| 4.46e-17 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_80acf5b03be35ed54a081c96b3d72548 | p2@NKX2-3 |
| 4.46e-17 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_80acf5b03be35ed54a081c96b3d72548 | p2@NKX2-3 |
| 5.3e-17 | FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_5f207a711b465a5aa249922a6f9a29f7 | p@chr7:136759451..136759469, + |
| 5.3e-17 | FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_5f207a711b465a5aa249922a6f9a29f7 | p@chr7:136759451..136759469, + |
| 8.36e-17 | FFCP PHASE2:Hg19::chr1:155225028..155225037,-#_7f6510c4898e72f36a6895036f23dc99 | p7@FAM189B |
| 8.36e-17 | FFCP PHASE1:Hg19::chr1:155225028..155225037,-#_7f6510c4898e72f36a6895036f23dc99 | p7@FAM189B |
| 1.05e-16 | FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_2f848666fa6ca1edecc733b04345a6d1 | p1@COLEC10 |
| 1.05e-16 | FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_2f848666fa6ca1edecc733b04345a6d1 | p1@COLEC10 |
| 1.88e-16 | FFCP PHASE2:Hg19::chr4:151503507..151503518,+#_15aa15eedddba98d0aff17f1c0fcaa98 | p6@MAB21L2 |
| 1.88e-16 | FFCP PHASE1:Hg19::chr4:151503507..151503518,+#_15aa15eedddba98d0aff17f1c0fcaa98 | p6@MAB21L2 |
| 2.92e-16 | FFCP PHASE1:Hg19::chr10:101292684..101292706,+#_fb8f2f5e637a04b4c576dbf1c6eec951 | p1@NKX2-3 |
| 2.92e-16 | FFCP PHASE2:Hg19::chr10:101292684..101292706,+#_fb8f2f5e637a04b4c576dbf1c6eec951 | p1@NKX2-3 |
| 4.41e-16 | FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_6c35915496f05d9e2fabea563c699c09 | p3@NBPF3 |
| 4.41e-16 | FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_6c35915496f05d9e2fabea563c699c09 | p3@NBPF3 |
