Personal tools

DOID:3908: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:3908
|alt_id=
|name=non-small cell lung carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002289;;NCI:C2926;;SNOMEDCT_2010_1_31:254637007;;UMLS_CUI:C0007131
|is_a=DOID:3905
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3908
|is_a=DOID:3905
|is_obsolete=
|located_in=
|located_in=
|name=non-small cell lung carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042]
|union_of=
|xref=MSH:D002289;;NCI:C2926;;SNOMEDCT_2010_1_31:254637007;;UMLS_CUI:C0007131
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:non-small cell lung carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D002289
NCI:C2926
SNOMEDCT_2010_1_31:254637007

UMLS_CUI:C0007131
Synonyms: "Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007]
"NSCLC" EXACT [NCI2004_11_17:C2926]
"NSCLC" EXACT [CSP2005:4005-0042]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:3905(lung carcinoma)



Children


is a:DOID:3910 (lung adenocarcinoma),DOID:4556 (lung large cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3908 (non-small cell lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data