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{{DOID
{{DOID
|id=DOID:4549
|alt_id=
|name=extraosseous chondrosarcoma
|namespace=
|def=
|xref=
|is_a=DOID:3371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|has_quality=
|has_quality=
|id=DOID:4549
|is_a=DOID:3371
|is_obsolete=
|located_in=
|located_in=
|name=extraosseous chondrosarcoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym=
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|xref=UMLS_CUI:C0855048
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:extraosseous chondrosarcoma
Namespace:FANTOM
Xrefs:
links:
UMLS_CUI:C0855048

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3371(chondrosarcoma)



Children


is a:DOID:6496 (extraskeletal myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Mouse (Mus musculus)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4549 (extraosseous chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr6:152792957..152792960,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152792957..152792960, -
5.42e-195FFCP PHASE1:Hg19::chr4:169935485..169935488,-#_1147d109bbe9988c7b81794ecc261253p@chr4:169935485..169935488, -
5.42e-195FFCP PHASE1:Hg19::chr1:145473286..145473295,+#_1147d109bbe9988c7b81794ecc261253p5@AB464458
5.42e-195FFCP PHASE2:Hg19::chr9:12848028..12848033,-#_1147d109bbe9988c7b81794ecc261253p@chr9:12848028..12848033, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141888..2141892,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141888..2141892, -
5.42e-195FFCP PHASE2:Hg19::chr14:88282738..88282741,-#_1147d109bbe9988c7b81794ecc261253p1@ENST00000554519
5.42e-195FFCP PHASE1:Hg19::chr6:152589396..152589401,-#_1147d109bbe9988c7b81794ecc261253p68@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:196296715..196296737,-#_1147d109bbe9988c7b81794ecc261253p@chr3:196296715..196296737, -
5.42e-195FFCP PHASE1:Hg19::chr1:192408018..192408032,-#_1147d109bbe9988c7b81794ecc261253p@chr1:192408018..192408032, -
5.42e-195FFCP PHASE1:Hg19::chr12:95941674..95941679,+#_1147d109bbe9988c7b81794ecc261253p@chr12:95941674..95941679, +
5.42e-195FFCP PHASE1:Hg19::chr8:107074411..107074421,+#_1147d109bbe9988c7b81794ecc261253p@chr8:107074411..107074421, +
5.42e-195FFCP PHASE1:Hg19::chr1:198595896..198595910,+#_1147d109bbe9988c7b81794ecc261253p@chr1:198595896..198595910, +
5.42e-195FFCP PHASE1:Hg19::chr1:112916133..112916138,-#_1147d109bbe9988c7b81794ecc261253p@chr1:112916133..112916138, -
5.42e-195FFCP PHASE2:Hg19::chr3:127441501..127441504,-#_1147d109bbe9988c7b81794ecc261253p59@MGLL
5.42e-195FFCP PHASE2:Hg19::chr12:71031372..71031377,-#_1147d109bbe9988c7b81794ecc261253p25@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr13:23027835..23027846,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23027835..23027846, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141993..2142006,+#_1147d109bbe9988c7b81794ecc261253p6@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr15:96181408..96181419,-#_1147d109bbe9988c7b81794ecc261253p@chr15:96181408..96181419, -
5.42e-195FFCP PHASE1:Hg19::chr14:88282738..88282741,-#_1147d109bbe9988c7b81794ecc261253p1@ENST00000554519
5.42e-195FFCP PHASE2:Hg19::chr6:152590052..152590068,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152590052..152590068, -
5.42e-195FFCP PHASE1:Hg19::chr13:23027835..23027846,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23027835..23027846, +
5.42e-195FFCP PHASE1:Hg19::chr15:96181408..96181419,-#_1147d109bbe9988c7b81794ecc261253p@chr15:96181408..96181419, -
5.42e-195FFCP PHASE2:Hg19::chr5:33361438..33361453,-#_1147d109bbe9988c7b81794ecc261253p@chr5:33361438..33361453, -
5.42e-195FFCP PHASE2:Hg19::chr2:175629357..175629367,-#_1147d109bbe9988c7b81794ecc261253p6@CHRNA1
5.42e-195FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_1147d109bbe9988c7b81794ecc261253p@chr6:150735014..150735021, -
5.42e-195FFCP PHASE1:Hg19::chr20:36848135..36848142,-#_1147d109bbe9988c7b81794ecc261253p@chr20:36848135..36848142, -
5.42e-195FFCP PHASE2:Hg19::chr6:152589245..152589256,-#_1147d109bbe9988c7b81794ecc261253p53@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:2141759..2141771,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141759..2141771, -
5.42e-195FFCP PHASE1:Hg19::chr9:13006722..13006729,-#_1147d109bbe9988c7b81794ecc261253p@chr9:13006722..13006729, -
5.42e-195FFCP PHASE1:Hg19::chr4:139817573..139817580,-#_1147d109bbe9988c7b81794ecc261253p@chr4:139817573..139817580, -
5.42e-195FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_1147d109bbe9988c7b81794ecc261253p@chr11:30257128..30257133, -
5.42e-195FFCP PHASE2:Hg19::chr3:157230506..157230511,+#_1147d109bbe9988c7b81794ecc261253p@chr3:157230506..157230511, +
5.42e-195FFCP PHASE2:Hg19::chr1:192407879..192407891,-#_1147d109bbe9988c7b81794ecc261253p@chr1:192407879..192407891, -
5.42e-195FFCP PHASE1:Hg19::chr7:18439468..18439477,+#_1147d109bbe9988c7b81794ecc261253p@chr7:18439468..18439477, +
5.42e-195FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_1147d109bbe9988c7b81794ecc261253p@chrX:135338329..135338337, -
5.42e-195FFCP PHASE2:Hg19::chr6:150740842..150740854,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150740842..150740854, +
5.42e-195FFCP PHASE2:Hg19::chr3:2140207..2140208,+#_1147d109bbe9988c7b81794ecc261253p34@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr1:145471703..145471706,+#_1147d109bbe9988c7b81794ecc261253p@chr1:145471703..145471706, +
5.42e-195FFCP PHASE2:Hg19::chr13:23733607..23733611,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733607..23733611, -
5.42e-195FFCP PHASE1:Hg19::chr7:79999046..79999051,+#_1147d109bbe9988c7b81794ecc261253p41@CD36
5.42e-195FFCP PHASE1:Hg19::chr3:1577628..1577634,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577628..1577634, -
5.42e-195FFCP PHASE1:Hg19::chr1:197873492..197873502,-#_1147d109bbe9988c7b81794ecc261253p@chr1:197873492..197873502, -
5.42e-195FFCP PHASE2:Hg19::chrX:135338397..135338402,-#_1147d109bbe9988c7b81794ecc261253p@chrX:135338397..135338402, -
5.42e-195FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_1147d109bbe9988c7b81794ecc261253p@chr9:18504821..18504825, +
5.42e-195FFCP PHASE1:Hg19::chr3:2140149..2140157,+#_1147d109bbe9988c7b81794ecc261253p25@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_1147d109bbe9988c7b81794ecc261253p@chr1:228783266..228783269, -
5.42e-195FFCP PHASE1:Hg19::chr13:23733607..23733611,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733607..23733611, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141813..2141822, -
5.42e-195FFCP PHASE1:Hg19::chr2:74780643..74780673,-#_1147d109bbe9988c7b81794ecc261253p30@LOXL3
5.42e-195FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_1147d109bbe9988c7b81794ecc261253p@chr2:188420455..188420469, +
5.42e-195FFCP PHASE2:Hg19::chr10:33244066..33244083,-#_1147d109bbe9988c7b81794ecc261253p@chr10:33244066..33244083, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589291..152589303,-#_1147d109bbe9988c7b81794ecc261253p38@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr5:109694595..109694599,+#_1147d109bbe9988c7b81794ecc261253p@chr5:109694595..109694599, +
5.42e-195FFCP PHASE2:Hg19::chr13:23169005..23169009,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157221979..157222025, -
5.42e-195FFCP PHASE1:Hg19::chr17:46178195..46178202,-#_1147d109bbe9988c7b81794ecc261253p12@CBX1
5.42e-195FFCP PHASE1:Hg19::chr13:23169005..23169009,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_1147d109bbe9988c7b81794ecc261253p@chr3:99680705..99680734, +
5.42e-195FFCP PHASE2:Hg19::chr18:74535969..74535980,-#_1147d109bbe9988c7b81794ecc261253p@chr18:74535969..74535980, -
5.42e-195FFCP PHASE1:Hg19::chr10:54786954..54786965,-#_1147d109bbe9988c7b81794ecc261253p@chr10:54786954..54786965, -
5.42e-195FFCP PHASE1:Hg19::chr2:53436150..53436154,-#_1147d109bbe9988c7b81794ecc261253p@chr2:53436150..53436154, -
5.42e-195FFCP PHASE1:Hg19::chr21:38309134..38309135,-#_1147d109bbe9988c7b81794ecc261253p@chr21:38309134..38309135, -
5.42e-195FFCP PHASE1:Hg19::chr1:43637641..43637648,-#_1147d109bbe9988c7b81794ecc261253p16@EBNA1BP2
5.42e-195FFCP PHASE2:Hg19::chr4:169935479..169935481,-#_1147d109bbe9988c7b81794ecc261253p@chr4:169935479..169935481, -
5.42e-195FFCP PHASE1:Hg19::chr1:172009977..172009985,+#_1147d109bbe9988c7b81794ecc261253p@chr1:172009977..172009985, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141862..2141887,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141862..2141887, -
5.42e-195FFCP PHASE2:Hg19::chr18:22251681..22251685,-#_1147d109bbe9988c7b81794ecc261253p@chr18:22251681..22251685, -
5.42e-195FFCP PHASE2:Hg19::chr3:106921055..106921063,-#_1147d109bbe9988c7b81794ecc261253p@chr3:106921055..106921063, -
5.42e-195FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942216..154942223, -
5.42e-195FFCP PHASE1:Hg19::chrX:591202..591211,-#_1147d109bbe9988c7b81794ecc261253p@chrX:591202..591211, -
5.42e-195FFCP PHASE2:Hg19::chr7:94540075..94540082,+#_1147d109bbe9988c7b81794ecc261253p21@PPP1R9A
5.42e-195FFCP PHASE2:Hg19::chr3:1577545..1577547,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577545..1577547, -
5.42e-195FFCP PHASE1:Hg19::chr18:74535888..74535894,-#_1147d109bbe9988c7b81794ecc261253p@chr18:74535888..74535894, -
5.42e-195FFCP PHASE2:Hg19::chr6:142993137..142993142,+#_1147d109bbe9988c7b81794ecc261253p@chr6:142993137..142993142, +
5.42e-195FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_1147d109bbe9988c7b81794ecc261253p@chr2:206927652..206927658, -
5.42e-195FFCP PHASE1:Hg19::chr5:128083931..128083952,+#_1147d109bbe9988c7b81794ecc261253p@chr5:128083931..128083952, +
5.42e-195FFCP PHASE2:Hg19::chr13:23734279..23734283,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23734279..23734283, +
5.42e-195FFCP PHASE1:Hg19::chr3:170537826..170537835,+#_1147d109bbe9988c7b81794ecc261253p@chr3:170537826..170537835, +
5.42e-195FFCP PHASE1:Hg19::chr1:145473297..145473306,+#_1147d109bbe9988c7b81794ecc261253p7@AB464458
5.42e-195FFCP PHASE1:Hg19::chr13:23734279..23734283,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23734279..23734283, +
5.42e-195FFCP PHASE2:Hg19::chr9:13005000..13005036,-#_1147d109bbe9988c7b81794ecc261253p@chr9:13005000..13005036, -
5.42e-195FFCP PHASE2:Hg19::chr3:157206082..157206087,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157206082..157206087, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141949..2141956,+#_1147d109bbe9988c7b81794ecc261253p21@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:154942206..154942211,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942206..154942211, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589452..152589462,-#_1147d109bbe9988c7b81794ecc261253p43@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr1:113250450..113250457,-#_1147d109bbe9988c7b81794ecc261253p18@RHOC
5.42e-195FFCP PHASE1:Hg19::chr3:157231406..157231414,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157231406..157231414, -
5.42e-195FFCP PHASE1:Hg19::chr1:192444852..192444861,+#_1147d109bbe9988c7b81794ecc261253p@chr1:192444852..192444861, +
5.42e-195FFCP PHASE2:Hg19::chr3:30442082..30442087,-#_1147d109bbe9988c7b81794ecc261253p@chr3:30442082..30442087, -
5.42e-195FFCP PHASE1:Hg19::chr8:107074457..107074458,+#_1147d109bbe9988c7b81794ecc261253p@chr8:107074457..107074458, +
5.42e-195FFCP PHASE1:Hg19::chr3:196296715..196296737,-#_1147d109bbe9988c7b81794ecc261253p@chr3:196296715..196296737, -
5.42e-195FFCP PHASE2:Hg19::chr3:127441545..127441550,-#_1147d109bbe9988c7b81794ecc261253p58@MGLL
5.42e-195FFCP PHASE1:Hg19::chr10:63700017..63700022,+#_1147d109bbe9988c7b81794ecc261253p@chr10:63700017..63700022, +
5.42e-195FFCP PHASE1:Hg19::chr3:2141746..2141758,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141746..2141758, -
5.42e-195FFCP PHASE2:Hg19::chr1:197889977..197890013,+#_1147d109bbe9988c7b81794ecc261253p@chr1:197889977..197890013, +
5.42e-195FFCP PHASE2:Hg19::chr13:23027882..23027888,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23027882..23027888, +
5.42e-195FFCP PHASE2:Hg19::chr18:22253588..22253590,+#_1147d109bbe9988c7b81794ecc261253p@chr18:22253588..22253590, +
5.42e-195FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_1147d109bbe9988c7b81794ecc261253p@chr15:96181421..96181428, -
5.42e-195FFCP PHASE2:Hg19::chrX:135338270..135338275,-#_1147d109bbe9988c7b81794ecc261253p@chrX:135338270..135338275, -
5.42e-195FFCP PHASE2:Hg19::chr6:152590257..152590288,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152590257..152590288, -

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