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{{UBERON
{{UBERON
|id=UBERON:0000014
|alt_id=
|name=zone of skin
|namespace=
|def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
|xref=EHDAA2:0001844;;EHDAA:6530;;EV:0100152;;FMA:86166;;GAID:933;;http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MA:0000151;;MAT:0000284;;MESH:A.17.815;;MIAA:0000284;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:20795001;;VHOG:0000860
|is_a=UBERON:0000064
|synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT []
|comment=we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
|comment=we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000014
|is_a=UBERON:0000064 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=zone of skin
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002097
|part_of=UBERON:0002097
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="portion of skin" EXACT [];;"region of skin" EXACT [];;"skin" EXACT [MA:0000151];;"skin region" EXACT [];;"skin zone" EXACT []
|union_of=
|xref=EHDAA2:0001844;;EHDAA:6530;;EV:0100152;;FMA:86166;;GAID:933;;http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MA:0000151;;MAT:0000284;;MESH:A.17.815;;MIAA:0000284;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:20795001;;VHOG:0000860
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:zone of skin
Namespace:FANTOM
Definition:"A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
Xrefs:
links:

EHDAA2:0001844
EHDAA:6530
EV:0100152
FMA:86166
GAID:933
[1]
[ 200px-Skin.svg.png 200px-Skin.svg.png]
MA:0000151
MAT:0000284
MESH:A.17.815
MIAA:0000284
OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
SCTID:20795001

VHOG:0000860
Synonyms: "portion of skin" EXACT []
"region of skin" EXACT []
"skin" EXACT [MA:0000151]
"skin region" EXACT []
"skin zone" EXACT []
Comments:we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0002097(skin of body)



Children

is a:UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1)
derives from:FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data