UBERON:0004121
From FANTOM5_SSTAR
| Name: | ectoderm-derived structure |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm) |
Children
| is a: | UBERON:0000004 (olfactory apparatus),UBERON:0000012 (somatic nervous system),UBERON:0000014 (zone of skin),UBERON:0000019 (camera-type eye),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0000166 (oral opening),UBERON:0000200 (gyrus),UBERON:0000349 (limbic system),UBERON:0000412 (dermal papilla),UBERON:0000941 (cranial nerve II),UBERON:0000955 (brain),UBERON:0000965 (lens of camera-type eye),UBERON:0000966 (retina),UBERON:0001017 (central nervous system),UBERON:0001708 (jaw skeleton),UBERON:0001723 (tongue),UBERON:0001726 (papilla of tongue),UBERON:0001781 (layer of retina),UBERON:0001798 (vitreous body),UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0001811 (conjunctiva),UBERON:0001826 (nasal cavity mucosa),UBERON:0001846 (internal ear),UBERON:0001849 (membranous labyrinth),UBERON:0001855 (cochlear duct of membranous labyrinth),UBERON:0001869 (cerebral hemisphere),UBERON:0001896 (medulla oblongata),UBERON:0001911 (mammary gland),UBERON:0001992 (papillary layer of dermis),UBERON:0002022 (insula),UBERON:0002025 (stratum basale of epidermis),UBERON:0002067 (dermis),UBERON:0002073 (hair follicle),UBERON:0002097 (skin of body),UBERON:0002196 (adenohypophysis),UBERON:0002227 (spiral organ of cochlea),UBERON:0002240 (spinal cord),UBERON:0002242 (nucleus pulposus),UBERON:0002259 (corpora quadrigemina),UBERON:0002328 (notochord),UBERON:0002342 (neural crest),UBERON:0002346 (neurectoderm),UBERON:0002360 (meninx),UBERON:0002419 (skin gland),UBERON:0002499 (cochlear labyrinth),UBERON:0002616 (regional part of brain),UBERON:0003023 (pontine tegmentum),UBERON:0003056 (pre-chordal neural plate),UBERON:0003072 (optic cup)... further results |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10012-101C3 (brain, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
... further results Mouse (Mus musculus)
- 10012-101C3 (brain, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004121 (ectoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
