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{{UBERON
{{UBERON
|id=UBERON:0000059
|alt_id=
|name=large intestine
|namespace=
|def="The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
|xref=AAO:0010396;;BTO:0000706;;EFO:0000840;;EMAPA:19252;;EV:0100077;;FMA:7201;;GAID:306;;galen:LargeIntestine;;MA:0000333;;MESH:A.03.492.411.495;;MIAA:0000046;;ncithesaurus:Large_Intestine;;OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA;;SCTID:181254001;;VHOG:0000054;;XAO:0000131
|is_a=UBERON:0000062;;UBERON:0004119
|synonym="intestinum crassum" RELATED [BTO:0000706]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
|subset=major_organ;;organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000059
|is_a=UBERON:0004921 ;;UBERON:0013765
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000160
|name=large intestine
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000160;;UBERON:0004907
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=major_organ;;organ_slim
|preceded_by=
|synonym="intestinum crassum" RELATED [BTO:0000706]
|union_of=
|xref=AAO:0010396;;BTO:0000706;;EFO:0000840;;EMAPA:19252;;EV:0100077;;FMA:7201;;GAID:306;;galen:LargeIntestine;;MA:0000333;;MESH:A.03.492.411.495;;MIAA:0000046;;ncithesaurus:Large_Intestine;;OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA;;SCTID:181254001;;VHOG:0000054;;XAO:0000131
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:large intestine
Namespace:FANTOM
Definition:"The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
Xrefs:
links:

AAO:0010396
BTO:0000706
EFO:0000840
EMAPA:19252
EV:0100077
FMA:7201
GAID:306
galen:LargeIntestine
MA:0000333
MESH:A.03.492.411.495
MIAA:0000046
ncithesaurus:Large_Intestine
OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
SCTID:181254001
VHOG:0000054

XAO:0000131
Synonyms: "intestinum crassum" RELATED [BTO:0000706]
Subset: major_organ
organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine),UBERON:0004907(lower digestive tract)



Children

part of:UBERON:0001052 (rectum),UBERON:0001153 (caecum),UBERON:0001155 (colon),CL:0002253 (epithelial cell of large intestine),CL:1000279 (smooth muscle cell of large intestine)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000059 (large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data