UBERON:0000059: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000059 | |||
|is_a=UBERON:0004921 ;;UBERON:0013765 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0000160 | |name=large intestine | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000160;;UBERON:0004907 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=major_organ;;organ_slim | ||
| | |synonym="intestinum crassum" RELATED [BTO:0000706] | ||
|union_of= | |||
|xref=AAO:0010396;;BTO:0000706;;EFO:0000840;;EMAPA:19252;;EV:0100077;;FMA:7201;;GAID:306;;galen:LargeIntestine;;MA:0000333;;MESH:A.03.492.411.495;;MIAA:0000046;;ncithesaurus:Large_Intestine;;OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA;;SCTID:181254001;;VHOG:0000054;;XAO:0000131 | |||
}} | }} |
Latest revision as of 17:04, 12 September 2014
Name: | large intestine | ||
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Namespace: | FANTOM | ||
Definition: | "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)] | ||
Xrefs: |
| ||
Synonyms: | "intestinum crassum" RELATED [BTO:0000706] | ||
Subset: |
major_organ organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element) |
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part_of: | UBERON:0000160(intestine),UBERON:0004907(lower digestive tract) |
Children
part of: | UBERON:0001052 (rectum),UBERON:0001153 (caecum),UBERON:0001155 (colon),CL:0002253 (epithelial cell of large intestine),CL:1000279 (smooth muscle cell of large intestine) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000059 (large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data