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{{UBERON
{{UBERON
|id=UBERON:0000970
|name=eye
|namespace=
|def="organ that detects light" [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
|xref=AAO:0010340;;BILA:0000017;;BTO:0000439;;EFO:0000827;;EMAPA:16198;;EV:0100336;;GAID:69;;MAT:0000140;;MESH:A.01.456.505.420;;MIAA:0000140;;OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA;;SCTID:244486005;;TGMA:0000024;;VHOG:0000275
|is_a=UBERON:0000020
|synonym="visual apparatus" RELATED [EV:0100336]
|comment=
|alt_id=UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
|alt_id=UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
|disjoint_from=
|anatomical_img_id=FMA:54448
|union_of=
|comment=Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that detects light." [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
|subset=functional_classification;;major_organ;;organ_slim;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000970
|is_a=UBERON:0000020
|is_obsolete=
|located_in=
|located_in=
|name=eye
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002104
|part_of=UBERON:0002104
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=functional_classification;;major_organ;;organ_slim;;uberon_slim
|preceded_by=
|synonym="light-detecting organ" RELATED [];;"photoreceptor" BROAD [];;"visual apparatus" RELATED [EV:0100336]
|union_of=
|xref=BILA:0000017;;BTO:0000439;;EFO:0000827;;EV:0100336;;FBbt:00005162;;GAID:69;;MAT:0000140;;MESH:A.01.456.505.420;;MIAA:0000140;;OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
}}
}}

Latest revision as of 17:12, 12 September 2014

Name:eye
Namespace:FANTOM
Definition:"An organ that detects light." UBERON:cjm, Wikipedia:Eye
Xrefs:
links:

BILA:0000017
BTO:0000439
EFO:0000827
EV:0100336
FBbt:00005162
GAID:69
MAT:0000140
MESH:A.01.456.505.420
MIAA:0000140

OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
Synonyms: "light-detecting organ" RELATED []
"photoreceptor" BROAD []
"visual apparatus" RELATED [EV:0100336]
Comments:Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
Alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
Subset: functional_classification
major_organ
organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ)
part_of:UBERON:0002104(visual system)



Children

is a:UBERON:0000047 (simple eye)
part of:UBERON:0005388 (photoreceptor array),UBERON:0005389 (transparent eye structure),UBERON:0007625 (pigment epithelium of eye),FF:0010054 (human eye - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000970 (eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341p4@Dct
3.94e-79FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88p10@SIX3
3.94e-79FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88p10@SIX3
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5fp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5fp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5fp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5fp3@LOC100504989, p3@Timeless
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045p6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045p6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045p@chr6:97891135..97891147, +
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437p1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_8c68c2ad39b4567974f60f2741579a91p3@Gngt2
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_8c68c2ad39b4567974f60f2741579a91p3@Gngt2
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_8c68c2ad39b4567974f60f2741579a91p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_8c68c2ad39b4567974f60f2741579a91p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_8c68c2ad39b4567974f60f2741579a91p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_8c68c2ad39b4567974f60f2741579a91p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_8c68c2ad39b4567974f60f2741579a91p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_8c68c2ad39b4567974f60f2741579a91p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_8c68c2ad39b4567974f60f2741579a91p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_8c68c2ad39b4567974f60f2741579a91p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_8c68c2ad39b4567974f60f2741579a91p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_8c68c2ad39b4567974f60f2741579a91p11@Rnf123
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_8c68c2ad39b4567974f60f2741579a91p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_8c68c2ad39b4567974f60f2741579a91p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_8c68c2ad39b4567974f60f2741579a91p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_8c68c2ad39b4567974f60f2741579a91p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_8c68c2ad39b4567974f60f2741579a91p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_8c68c2ad39b4567974f60f2741579a91p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_8c68c2ad39b4567974f60f2741579a91p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_8c68c2ad39b4567974f60f2741579a91p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_8c68c2ad39b4567974f60f2741579a91p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_8c68c2ad39b4567974f60f2741579a91p3@Rrh
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_8c68c2ad39b4567974f60f2741579a91p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_8c68c2ad39b4567974f60f2741579a91p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_8c68c2ad39b4567974f60f2741579a91p1@Impg2
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_8c68c2ad39b4567974f60f2741579a91p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_8c68c2ad39b4567974f60f2741579a91p1@ENSMUST00000173365
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_8c68c2ad39b4567974f60f2741579a91p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_8c68c2ad39b4567974f60f2741579a91p@chr7:28282354..28282365, +

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