UBERON:0000978: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0000978 | |id=UBERON:0000978 | ||
|is_a=UBERON: | |is_a=UBERON:0006058 ;;UBERON:0008784 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=leg | |name=leg | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002103 | |part_of=UBERON:0002103 | ||
Latest revision as of 17:12, 12 September 2014
| Name: | leg | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb] | ||
| Xrefs: |
| ||
| Synonyms: |
"lower extremity" RELATED [MESH:A.01.378.610] "tetrapod leg" EXACT [] | ||
| Comments: | The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot | ||
| Alt_id: | UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006058(multi-limb segment region),UBERON:0008784(lower limb segment) |
|---|---|
| part_of: | UBERON:0002103(hindlimb) |
Children
| part of: | UBERON:0000376 (hindlimb stylopod),UBERON:0001383 (muscle of leg),UBERON:0001465 (knee),UBERON:0003569 (leg connective tissue),UBERON:0003823 (hindlimb zeugopod),UBERON:0004174 (leg joint),UBERON:0004466 (musculature of leg),UBERON:0005893 (leg bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10267-104D6
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10310-104I4
- 10320-105A5
- 10323-105A8
- 10338-105C5
- 1350-25C3 (bone (os femoris), neonate N20)
... further results Mouse (Mus musculus)
- 10264-104D3
- 10267-104D6
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10310-104I4
- 10320-105A5
- 10323-105A8
- 10338-105C5
- 1350-25C3 (bone (os femoris), neonate N20)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000978 (leg), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6 | p@chr2:179396370..179396375, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38 | p@chr2:179514306..179514308, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_87071814312013c7792190cdab31f7ea | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7ea | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_87071814312013c7792190cdab31f7ea | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_87071814312013c7792190cdab31f7ea | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_87071814312013c7792190cdab31f7ea | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_87071814312013c7792190cdab31f7ea | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_87071814312013c7792190cdab31f7ea | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_87071814312013c7792190cdab31f7ea | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7ea | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7ea | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7ea | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_87071814312013c7792190cdab31f7ea | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_87071814312013c7792190cdab31f7ea | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_87071814312013c7792190cdab31f7ea | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_87071814312013c7792190cdab31f7ea | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_87071814312013c7792190cdab31f7ea | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_87071814312013c7792190cdab31f7ea | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7ea | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_87071814312013c7792190cdab31f7ea | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7ea | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_87071814312013c7792190cdab31f7ea | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_87071814312013c7792190cdab31f7ea | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_87071814312013c7792190cdab31f7ea | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_87071814312013c7792190cdab31f7ea | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_87071814312013c7792190cdab31f7ea | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_87071814312013c7792190cdab31f7ea | p@chr2:152590465..152590472, - |
