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{{UBERON
{{UBERON
|id=UBERON:0001020
|alt_id=UBERON:FBbt_00005103-FMA_76741
|name=commissure
|namespace=
|def="White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure]
|xref=FBbt:00005103;;FMA:83906;;ncithesaurus:Commissure;;NIF_GrossAnatomy:nlx_anat_20090513;;OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw;;TADS:0000201
|is_a=UBERON:0001018
|synonym="commissure of neuraxis" EXACT [FMA:83906];;"neuraxis commissure" EXACT [FMA:83906]
|comment=*not* the same as FMA:76741 Commissure
|comment=*not* the same as FMA:76741 Commissure
|alt_id=UBERON:FBbt_00005103-FMA_76741
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001020
|is_a=UBERON:0001018
|is_obsolete=
|located_in=
|located_in=
|name=nervous system commissure
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="commissure of neuraxis" EXACT [FMA:83906];;"neuraxis commissure" EXACT [FMA:83906]
|union_of=
|xref=FBbt:00005103;;FMA:83906;;ncithesaurus:Commissure;;NIF_GrossAnatomy:nlx_anat_20090513;;OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw;;TADS:0000201
}}
}}

Latest revision as of 17:14, 12 September 2014

Name:nervous system commissure
Namespace:FANTOM
Definition:"White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." ISBN:3110148986, Wikipedia:Commissure
Xrefs:
links:

FBbt:00005103
FMA:83906
ncithesaurus:Commissure
NIF_GrossAnatomy:nlx_anat_20090513
OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw

TADS:0000201
Synonyms: "commissure of neuraxis" EXACT [FMA:83906]
"neuraxis commissure" EXACT [FMA:83906]
Comments:*not* the same as FMA:76741 Commissure
Alt_id: UBERON:FBbt_00005103-FMA_76741
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001018(axon tract)



Children

is a:UBERON:0005970 (brain commissure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001020 (nervous system commissure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_99cbc12aaefe64a0a7d64e32b55fa410p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_99cbc12aaefe64a0a7d64e32b55fa410p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_99cbc12aaefe64a0a7d64e32b55fa410p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_99cbc12aaefe64a0a7d64e32b55fa410p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_99cbc12aaefe64a0a7d64e32b55fa410p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_99cbc12aaefe64a0a7d64e32b55fa410p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_99cbc12aaefe64a0a7d64e32b55fa410p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_99cbc12aaefe64a0a7d64e32b55fa410p@chr14:36462819..36462832, +
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_53fb775105d59488b918110de4540133p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_53fb775105d59488b918110de4540133p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_53fb775105d59488b918110de4540133p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_53fb775105d59488b918110de4540133p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_53fb775105d59488b918110de4540133p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_53fb775105d59488b918110de4540133p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_53fb775105d59488b918110de4540133p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_53fb775105d59488b918110de4540133p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_04aa6881cf657bbfcc1f4bfd6214a9c3p@chr19:35788742..35788752, +
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_04aa6881cf657bbfcc1f4bfd6214a9c3p10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_04aa6881cf657bbfcc1f4bfd6214a9c3p10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_04aa6881cf657bbfcc1f4bfd6214a9c3p@chr19:35788742..35788752, +
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p5@C10orf105
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5p5@C10orf105
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5p@chr8:42037488..42037504, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_d20b12d9defa295b6e7e9b5f929ffbb8p16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_d20b12d9defa295b6e7e9b5f929ffbb8p24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_d20b12d9defa295b6e7e9b5f929ffbb8p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_d20b12d9defa295b6e7e9b5f929ffbb8p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_d20b12d9defa295b6e7e9b5f929ffbb8p16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_d20b12d9defa295b6e7e9b5f929ffbb8p24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr13:99135698..99135706, +
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep15@CNP
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_5a5cf6e49d9fcdd927d4c0bc0f60079ep@chr7:129015806..129015815, +
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_5a5cf6e49d9fcdd927d4c0bc0f60079ep26@PRLR
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_af81898a99a0086591fba8c445b6717cp2@LOC154449
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_af81898a99a0086591fba8c445b6717cp2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_45ef571d4b45d257f2658976d630002dp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_45ef571d4b45d257f2658976d630002dp@chr10:7454514..7454525, -
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_45ef571d4b45d257f2658976d630002dp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_45ef571d4b45d257f2658976d630002dp@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_45ef571d4b45d257f2658976d630002dp6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_45ef571d4b45d257f2658976d630002dp@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_45ef571d4b45d257f2658976d630002dp31@CKAP4
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_45ef571d4b45d257f2658976d630002dp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_45ef571d4b45d257f2658976d630002dp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_45ef571d4b45d257f2658976d630002dp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_45ef571d4b45d257f2658976d630002dp31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_45ef571d4b45d257f2658976d630002dp6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_45ef571d4b45d257f2658976d630002dp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_45ef571d4b45d257f2658976d630002dp@chrX:103031196..103031205, -
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_609ed87f440c20869f0dedb19e68a9edp@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_609ed87f440c20869f0dedb19e68a9edp@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_609ed87f440c20869f0dedb19e68a9edp8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_609ed87f440c20869f0dedb19e68a9edp@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_609ed87f440c20869f0dedb19e68a9edp@chr17:36726052..36726061, -
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_609ed87f440c20869f0dedb19e68a9edp@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_609ed87f440c20869f0dedb19e68a9edp@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_609ed87f440c20869f0dedb19e68a9edp@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_609ed87f440c20869f0dedb19e68a9edp8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_609ed87f440c20869f0dedb19e68a9edp@chr17:36726052..36726061, -
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_a20fd07cee0d65d08f163224e72f8a5dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_a20fd07cee0d65d08f163224e72f8a5dp8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_a20fd07cee0d65d08f163224e72f8a5dp38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_a20fd07cee0d65d08f163224e72f8a5dp@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_a20fd07cee0d65d08f163224e72f8a5dp@chr3:190578500..190578506, -
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_a20fd07cee0d65d08f163224e72f8a5dp10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_a20fd07cee0d65d08f163224e72f8a5dp8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_a20fd07cee0d65d08f163224e72f8a5dp13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_a20fd07cee0d65d08f163224e72f8a5dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_a20fd07cee0d65d08f163224e72f8a5dp@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_a20fd07cee0d65d08f163224e72f8a5dp38@ANKS1B
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_a20fd07cee0d65d08f163224e72f8a5dp6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_a20fd07cee0d65d08f163224e72f8a5dp6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_a20fd07cee0d65d08f163224e72f8a5dp8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_a20fd07cee0d65d08f163224e72f8a5dp8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_a20fd07cee0d65d08f163224e72f8a5dp@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_a20fd07cee0d65d08f163224e72f8a5dp13@TTLL4
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_a20fd07cee0d65d08f163224e72f8a5dp@chr3:190578500..190578506, -

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