UBERON:0002227: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_75715-MA_0001193 | ||
|comment=Todo - check XAO, taxon constraints | |comment=Todo - check XAO, taxon constraints | ||
|created_by= | |created_by= | ||
| | |def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002227 | |||
|is_a=UBERON:0000020 ;;UBERON:0004121 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=spiral organ of cochlea | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001855 | |part_of=UBERON:0001855 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string | ||
| | |subset=uberon_slim | ||
| | |synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT [] | ||
|union_of= | |||
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145 | |||
}} | }} | ||
Latest revision as of 17:28, 12 September 2014
| Name: | spiral organ of cochlea | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] | ||
| Xrefs: |
| ||
| Synonyms: |
"basilar papilla" RELATED [BTO:0001691] "cochlear spiral organ" EXACT [] "Corti's organ" RELATED [BTO:0001691] "organ of corti" RELATED [] "organum spirale" RELATED [BTO:0001691] "organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti] "spiral organ" EXACT [] "spiral organ of corti" EXACT [] | ||
| Comments: | Todo - check XAO, taxon constraints | ||
| Alt_id: | UBERON:FMA_75715-MA_0001193 | ||
| Subset: | uberon_slim |
200px-Cochlea-crosssection.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001855(cochlear duct of membranous labyrinth) |
Children
| part of: | CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_94b85a8110f1309d0c218c5f692a21e0 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_94b85a8110f1309d0c218c5f692a21e0 | p4@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_94b85a8110f1309d0c218c5f692a21e0 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_94b85a8110f1309d0c218c5f692a21e0 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_94b85a8110f1309d0c218c5f692a21e0 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_94b85a8110f1309d0c218c5f692a21e0 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_94b85a8110f1309d0c218c5f692a21e0 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_94b85a8110f1309d0c218c5f692a21e0 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_94b85a8110f1309d0c218c5f692a21e0 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_94b85a8110f1309d0c218c5f692a21e0 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_94b85a8110f1309d0c218c5f692a21e0 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_94b85a8110f1309d0c218c5f692a21e0 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:63079735..63079745, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:42158627..42158630, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_94b85a8110f1309d0c218c5f692a21e0 | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:130461150..130461185, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
