Personal tools

UBERON:0002299: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002299
|alt_id=UBERON:FMA_82493-MA_0000420
|name=alveolus of lung
|namespace=
|def="Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
|xref=BTO:0000060;;EFO:0001985;;EMAPA:19182;;EMAPA:19184;;EMAPA:19186;;EMAPA:19188;;EMAPA:19190;;EV:0100043;;FMA:7318;;GAID:349;;http://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg;;MA:0000420;;MESH:A.04.411.715;;SCTID:361364000;;VHOG:0001445
|is_a=UBERON:0003215;;UBERON:0004119
|synonym="alveoli" RELATED PLURAL [BTO:0000060];;"alveolus" BROAD [];;"alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus];;"alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus];;"lung alveolus" EXACT [];;"pulmonary alveolus" EXACT [FMA:7318]
|comment=
|comment=
|alt_id=UBERON:FMA_82493-MA_0000420
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002299
|is_a=UBERON:0003215 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=alveolus of lung
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002048;;UBERON:0002169;;UBERON:0006524
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="alveoli" RELATED PLURAL [BTO:0000060];;"alveolus" BROAD [];;"alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus];;"alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus];;"lung alveolus" EXACT [];;"pulmonary alveolus" EXACT [FMA:7318]
|union_of=
|xref=BTO:0000060;;EFO:0001985;;EMAPA:19182;;EMAPA:19184;;EMAPA:19186;;EMAPA:19188;;EMAPA:19190;;EV:0100043;;FMA:7318;;GAID:349;;http://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg;;MA:0000420;;MESH:A.04.411.715;;SCTID:361364000;;VHOG:0001445
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:alveolus of lung
Namespace:FANTOM
Definition:"Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
Xrefs:
links:

BTO:0000060
EFO:0001985
EMAPA:19182
EMAPA:19184
EMAPA:19186
EMAPA:19188
EMAPA:19190
EV:0100043
FMA:7318
GAID:349
[1]
MA:0000420
MESH:A.04.411.715
SCTID:361364000

VHOG:0001445
Synonyms: "alveoli" RELATED PLURAL [BTO:0000060]
"alveolus" BROAD []
"alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus]
"alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus]
"lung alveolus" EXACT []
"pulmonary alveolus" EXACT [FMA:7318]
Alt_id: UBERON:FMA_82493-MA_0000420
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003215(alveolus),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0002048(lung),UBERON:0002169(alveolar sac),UBERON:0006524(alveolar system)



Children

part of:UBERON:0004821 (pulmonary alveolus epithelium),UBERON:0004894 (alveolar wall),CL:0010003 (epithelial cell of alveolus of lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002299 (alveolus of lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_0af26381b37140096143f25893fab3adp@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_0af26381b37140096143f25893fab3adp16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_0af26381b37140096143f25893fab3adp1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_0af26381b37140096143f25893fab3adp@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_0af26381b37140096143f25893fab3adp@chr3:87647430..87647437, -
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_0af26381b37140096143f25893fab3adp@chr14:36536932..36536937, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_0af26381b37140096143f25893fab3adp16@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_0af26381b37140096143f25893fab3adp14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_0af26381b37140096143f25893fab3adp1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_0af26381b37140096143f25893fab3adp@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_0af26381b37140096143f25893fab3adp@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_0af26381b37140096143f25893fab3adp12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_0af26381b37140096143f25893fab3adp12@CLEC16A
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_0af26381b37140096143f25893fab3adp1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_0af26381b37140096143f25893fab3adp13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_0af26381b37140096143f25893fab3adp14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_0af26381b37140096143f25893fab3adp9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_0af26381b37140096143f25893fab3adp1@ENST00000430271
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_0af26381b37140096143f25893fab3adp9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_0af26381b37140096143f25893fab3adp13@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_0af26381b37140096143f25893fab3adp13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_0af26381b37140096143f25893fab3adp13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_0af26381b37140096143f25893fab3adp1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_0af26381b37140096143f25893fab3adp12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_0af26381b37140096143f25893fab3adp1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_0af26381b37140096143f25893fab3adp@chr17:63511856..63511858, -
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_0af26381b37140096143f25893fab3adp@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_0af26381b37140096143f25893fab3adp12@CPXM1
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_4a9219081127c8303bd345abce4846f9p@chr2:191696381..191696384, -
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_4a9219081127c8303bd345abce4846f9p@chr2:191696381..191696384, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_96dedb9e158caaa4a1147dd6369ae0eap7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_96dedb9e158caaa4a1147dd6369ae0eap30@NELF
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_96dedb9e158caaa4a1147dd6369ae0eap30@NELF
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:41809203..41809208, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:106266838..106266843, +
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_96dedb9e158caaa4a1147dd6369ae0eap11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr8:122157279..122157284, -
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_96dedb9e158caaa4a1147dd6369ae0eap11@DNMBP
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_96dedb9e158caaa4a1147dd6369ae0eap3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_96dedb9e158caaa4a1147dd6369ae0eap30@PDP1
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_96dedb9e158caaa4a1147dd6369ae0eap3@FMR1NB
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_96dedb9e158caaa4a1147dd6369ae0eap30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_96dedb9e158caaa4a1147dd6369ae0eap7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr9:103785643..103785646, -
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_96dedb9e158caaa4a1147dd6369ae0eap@chr11:104005546..104005596, -
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_09f63bce7f87641b220e2740a4de6bafp@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_09f63bce7f87641b220e2740a4de6bafp@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_09f63bce7f87641b220e2740a4de6bafp@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45405393..45405412, +
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_09f63bce7f87641b220e2740a4de6bafp6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_09f63bce7f87641b220e2740a4de6bafp6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_09f63bce7f87641b220e2740a4de6bafp@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_09f63bce7f87641b220e2740a4de6bafp@chr3:139035972..139036016, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_09f63bce7f87641b220e2740a4de6bafp@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_09f63bce7f87641b220e2740a4de6bafp5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_09f63bce7f87641b220e2740a4de6bafp@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_09f63bce7f87641b220e2740a4de6bafp12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399263..45399274, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_09f63bce7f87641b220e2740a4de6bafp5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_09f63bce7f87641b220e2740a4de6bafp@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_09f63bce7f87641b220e2740a4de6bafp@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_09f63bce7f87641b220e2740a4de6bafp36@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_09f63bce7f87641b220e2740a4de6bafp@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_09f63bce7f87641b220e2740a4de6bafp12@AADAT
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_09f63bce7f87641b220e2740a4de6bafp@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_09f63bce7f87641b220e2740a4de6bafp@chr12:65386452..65386492, -
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_09f63bce7f87641b220e2740a4de6bafp@chr15:55806847..55806854, -
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_09f63bce7f87641b220e2740a4de6bafp36@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_09f63bce7f87641b220e2740a4de6bafp@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_09f63bce7f87641b220e2740a4de6bafp34@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45399294..45399301, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_09f63bce7f87641b220e2740a4de6bafp34@NELF
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_09f63bce7f87641b220e2740a4de6bafp@chr1:93054640..93054674, -
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_09f63bce7f87641b220e2740a4de6bafp@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_09f63bce7f87641b220e2740a4de6bafp@chr1:119837700..119837705, +
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_bbff610dcf63c338a19461424f79a43cp1@BC018659
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_bbff610dcf63c338a19461424f79a43cp1@BC018659
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_0a0145ae16858e372f6421984654cff1p@chr14:29047235..29047244, +
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_0a0145ae16858e372f6421984654cff1p@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_8049188f4ce3ec2c516b45d3f3f48219p@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_8049188f4ce3ec2c516b45d3f3f48219p@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_c2dfcc9cbc9bc2b6d56a06305308ef8cp@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_c2dfcc9cbc9bc2b6d56a06305308ef8cp@chr7:27163592..27163605, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002299&oldid=3277418"