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|located_in=
|located_in=
|name=striatum
|name=striatum
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420;;UBERON:0006098
|part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420;;UBERON:0006098

Latest revision as of 17:32, 12 September 2014

Name:striatum
Namespace:FANTOM
Definition:"A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum]
Xrefs:
links:

ABA:STR
BM:N
BTO:0000418
EFO:0000109
EMAPA:17549
FMA:77618
FMA:83683
[1]
[ 200px-BrainCaudatePutamen.svg.png 200px-BrainCaudatePutamen.svg.png]
MA:0000891
MESH:A.08.186.211.730.885.105.487.550
ncithesaurus:Striatum

NIF_GrossAnatomy:birnlex_1672
Synonyms: "corpus striatum" RELATED [MA:0000891]
"neostriatum" EXACT [GO:0021756, Wikipedia:Striatum]
"striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum]
Comments:AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen
Alt_id: UBERON:MA_0000891-FMA_77618
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011300(gray matter of telencephalon)
part_of:UBERON:0000204(ventral part of telencephalon),UBERON:0000369(corpus striatum),UBERON:0002420(basal ganglion),UBERON:0006098(basal nuclear complex)



Children

part of:UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),CL:0002613 (striatum neuron),UBERON:0005382 (dorsal striatum),UBERON:0005403 (ventral striatum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002435 (striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr18:47967428..47967437, -
2.57e-195FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr12:6031299..6031315, -
2.57e-195FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr18:47967428..47967437, -
2.57e-195FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr14:78638610..78638621, +
2.57e-195FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr13:112726433..112726446, +
2.57e-195FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr12:6031299..6031315, -
2.57e-195FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr14:78638610..78638621, +
2.57e-195FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr1:31352916..31352926, -
2.57e-195FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr13:112726433..112726446, +
6.72e-157FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828fp2@BC051739
6.72e-157FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr15:35546024..35546035, -
6.72e-157FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr17:19390211..19390223, +
6.72e-157FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828fp2@BC051739
6.72e-157FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr17:19390211..19390223, +
6.72e-157FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr15:35546024..35546035, -
1.5e-156FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16p23@KCNAB1
1.5e-156FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16p23@KCNAB1
3.35e-156FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788p6@SYNDIG1L
3.35e-156FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788p6@SYNDIG1L
6.94e-147FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93dp27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93dp@chr18:47967443..47967452, -
6.94e-147FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93dp@chrX:102663083..102663098, +
6.94e-147FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93dp@chr18:47967443..47967452, -
6.94e-147FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93dp@chr8:115354253..115354290, +
6.94e-147FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93dp22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93dp27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93dp@chr4:71945904..71945922, +
6.94e-147FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93dp@chr11:47617035..47617045, -
6.94e-147FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93dp11@SCN8A
6.94e-147FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93dp@chr4:71945904..71945922, +
6.94e-147FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93dp11@SCN8A
6.94e-147FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93dp@chr3:63542313..63542321, +
6.94e-147FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93dp2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93dp@chr18:54898506..54898515, +
6.94e-147FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93dp@chr17:7271778..7271784, +
6.94e-147FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93dp@chr3:63542313..63542321, +
6.94e-147FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93dp2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93dp5@ENST00000514240
6.94e-147FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93dp@chr15:37777334..37777345, -
6.94e-147FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93dp@chr15:37777334..37777345, -
6.94e-147FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93dp@chrX:102663083..102663098, +
6.94e-147FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93dp@chr18:54898506..54898515, +
6.94e-147FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93dp5@ENST00000514240
6.94e-147FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93dp@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93dp@chr11:47617035..47617045, -
6.94e-147FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93dp22@PRLR
6.94e-147FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93dp@chr17:7271778..7271784, +
2.79e-131FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr11:26497871..26497889, +
2.79e-131FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr2:234227370..234227385, +
2.79e-131FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr11:26497871..26497889, +
2.79e-131FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr2:234227370..234227385, +
2.79e-131FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap10@SYNPR
2.79e-131FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap10@SYNPR
3.91e-131FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3p9@DOCK4
3.91e-131FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3p1@ENST00000421878
3.91e-131FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3p1@ENST00000421878
5.46e-131FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978p8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978p8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978p1@LINC00523
5.46e-131FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978p1@LINC00523
5.46e-131FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978p@chr2:212989626..212989648, -
5.46e-131FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978p@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978p@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978p@chr2:212989626..212989648, -
1.07e-130FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6fp14@ADORA2A
1.07e-130FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6fp8@ANO3
1.07e-130FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6fp8@ANO3
1.07e-130FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6fp14@ADORA2A
4.07e-130FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980p@chr16:84027018..84027029, +
4.07e-130FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980p@chr16:84027018..84027029, +
5.62e-113FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65fp3@GPR149
5.62e-113FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65fp3@GPR149
5.62e-113FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65fp@chr13:98995904..98995913, +
5.62e-113FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65fp@chr13:98995904..98995913, +
7.5e-113FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610p@chr6:12890045..12890049, +
7.5e-113FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610p@chr6:12890045..12890049, +
1.0e-112FFCP PHASE1:Hg19::chr2:242171468..242171498,-#_3fc91b4cb23062dbd2bb35f0d554b885p@chr2:242171468..242171498, -
1.0e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_3fc91b4cb23062dbd2bb35f0d554b885p@chr2:7112752..7112770, +

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