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{{UBERON
{{UBERON
|id=UBERON:0002553
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552
|name=anatomical cavity
|namespace=
|def="Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
|xref=EHDAA:2329;;EHDAA:2337;;EHDAA:2347;;EHDAA:293;;EHDAA:4741;;EHDAA:48;;EHDAA:638;;EHDAA:644;;EMAPA:16054;;FMA:67552;;galen:Cavity;;NIF_GrossAnatomy:birnlex_1011
|is_a=UBERON:0000464
|synonym="cavity" EXACT []
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002553
|is_a=UBERON:0000464
|is_obsolete=
|located_in=
|located_in=
|name=anatomical cavity
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="cavity" EXACT []
|union_of=
|xref=EHDAA:2329;;EHDAA:2337;;EHDAA:2347;;EHDAA:293;;EHDAA:4741;;EHDAA:48;;EHDAA:638;;EHDAA:644;;EMAPA:16054;;FMA:67552;;galen:Cavity;;ncithesaurus:Lumen_Space;;NIF_GrossAnatomy:birnlex_1011
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:anatomical cavity
Namespace:FANTOM
Definition:"Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
Xrefs:
links:

EHDAA:2329
EHDAA:2337
EHDAA:2347
EHDAA:293
EHDAA:4741
EHDAA:48
EHDAA:638
EHDAA:644
EMAPA:16054
FMA:67552
galen:Cavity
ncithesaurus:Lumen_Space

NIF_GrossAnatomy:birnlex_1011
Synonyms: "cavity" EXACT []
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000464(anatomical space)



Children

is a:UBERON:0000167 (oral cavity),UBERON:0001707 (nasal cavity),UBERON:0001825 (paranasal sinus),UBERON:0002323 (body cavity),UBERON:0003886 (body cavity precursor),UBERON:0005606 (hyaloid cavity)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002553 (anatomical cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data