UBERON:0002791: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 10: | Line 10: | ||
|has_quality= | |has_quality= | ||
|id=UBERON:0002791 | |id=UBERON:0002791 | ||
|is_a=UBERON:0002780 | |is_a=UBERON:0002780 ;;UBERON:0010314 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=regional part of telencephalon | |name=regional part of telencephalon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001893 | |part_of=UBERON:0001893 | ||
Latest revision as of 17:35, 12 September 2014
| Name: | regional part of telencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical structure of brain of telencephalon" EXACT [OBOL:automatic] "biological structure of brain of telencephalon" EXACT [OBOL:automatic] "brain anatomical structure of telencephalon" EXACT [OBOL:automatic] "brain biological structure of telencephalon" EXACT [OBOL:automatic] "neuraxis segment of telencephalon" EXACT [OBOL:automatic] "regional part of brain of telencephalon" EXACT [OBOL:automatic] "segment of brain of telencephalon" EXACT [OBOL:automatic] "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700] "telencephalon anatomical structure of brain" EXACT [OBOL:automatic] "telencephalon biological structure of brain" EXACT [OBOL:automatic] "telencephalon brain anatomical structure" EXACT [OBOL:automatic] "telencephalon brain biological structure" EXACT [OBOL:automatic] "telencephalon neuraxis segment" EXACT [OBOL:automatic] "telencephalon regional part of brain" EXACT [OBOL:automatic] "telencephalon segment" EXACT [FMA:62374] "telencephalon segment of brain" EXACT [OBOL:automatic] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001893(telencephalon) |
Children
| is a: | UBERON:0000203 (pallium),UBERON:0000204 (ventral part of telencephalon),UBERON:0001954 (Ammon's horn),UBERON:0002421 (hippocampal formation),UBERON:0002619 (regional part of cerebral cortex),UBERON:0005366 (olfactory lobe) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002791 (regional part of telencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.19e-122 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_631f05ff86f5231fe28f5b6a9e59365e | p3@GRIN2B |
| 6.19e-122 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_631f05ff86f5231fe28f5b6a9e59365e | p3@GRIN2B |
| 1.56e-120 | FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_71fdc5acdd5cdc5f9f94f91c0a9e1275 | p3@PDYN |
| 1.56e-120 | FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_71fdc5acdd5cdc5f9f94f91c0a9e1275 | p3@PDYN |
| 2.81e-118 | FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_e63702e7da1db5238dd8263fd2cf93c5 | p1@ENST00000527477, p1@ENST00000530858 |
| 2.81e-118 | FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_e63702e7da1db5238dd8263fd2cf93c5 | p1@ENST00000527477, p1@ENST00000530858 |
| 7.36e-118 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_3d10753ba7fa4280bb959937828a0acd | p@chr5:80255907..80255942, + |
| 7.36e-118 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_3d10753ba7fa4280bb959937828a0acd | p@chr5:80255907..80255942, + |
| 2.39e-117 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_8f4d04b275e205eb8568849bd2022acf | p1@NR2E1 |
| 2.39e-117 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_8f4d04b275e205eb8568849bd2022acf | p1@NR2E1 |
| 1.59e-116 | FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_3f376f04e7ca9ed7a24d40f6362c81ad | p@chr12:11652664..11652681, + |
| 1.59e-116 | FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_3f376f04e7ca9ed7a24d40f6362c81ad | p@chr12:11652664..11652681, + |
| 3.67e-116 | FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_355ded625dfb60d4929c12d4a57f5486 | p6@PPP2R2C |
| 3.67e-116 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_355ded625dfb60d4929c12d4a57f5486 | p2@CDH9 |
| 3.67e-116 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_355ded625dfb60d4929c12d4a57f5486 | p2@CDH9 |
| 3.67e-116 | FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_355ded625dfb60d4929c12d4a57f5486 | p6@PPP2R2C |
| 2.19e-115 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_f2fecdf179b6674d4ff8f11846af51be | p8@LRRC7 |
| 2.19e-115 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_f2fecdf179b6674d4ff8f11846af51be | p8@LRRC7 |
| 2.25e-115 | FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_7fc0baeb1032ac002bcdbfe2ae5435a9 | p2@NAALAD2 |
| 2.25e-115 | FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_7fc0baeb1032ac002bcdbfe2ae5435a9 | p2@NAALAD2 |
| 3.0e-115 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_42c15ad231d63273cdf90eb334ba1c08 | p@chr11:132982177..132982181, - |
| 3.0e-115 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_42c15ad231d63273cdf90eb334ba1c08 | p@chr11:132982177..132982181, - |
| 4.15e-115 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_50dba1381c94c63065e81f9be9e6e307 | p2@TIAM2 |
| 4.15e-115 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_50dba1381c94c63065e81f9be9e6e307 | p2@TIAM2 |
| 5.99e-115 | FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_126938f1041daf6b0bfd4ec198429317 | p@chr19:54462560..54462571, + |
| 5.99e-115 | FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_126938f1041daf6b0bfd4ec198429317 | p@chr19:54462560..54462571, + |
| 1.59e-114 | FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_f2d46dc0fb2e237d0c192f843305104e | p2@PDYN |
| 1.59e-114 | FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_f2d46dc0fb2e237d0c192f843305104e | p2@PDYN |
| 2.03e-114 | FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_2b8b303e5c214b05f3a3ec24cb517f5e | p13@GABRA2 |
| 2.03e-114 | FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_2b8b303e5c214b05f3a3ec24cb517f5e | p13@GABRA2 |
| 3.81e-114 | FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_49d34443a1eb21685bc6d931b9f83c92 | p@chr12:14133820..14133830, - |
| 3.81e-114 | FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_49d34443a1eb21685bc6d931b9f83c92 | p@chr12:14133820..14133830, - |
| 1.47e-113 | FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_0f654c8c4657b0be1f01aea9b9381bac | p@chr19:54462732..54462743, + |
| 1.47e-113 | FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_0f654c8c4657b0be1f01aea9b9381bac | p@chr19:54462732..54462743, + |
| 1.75e-113 | FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_debe8b33362c8c69873b95f8e098d93d | p@chr2:196990526..196990535, - |
| 1.75e-113 | FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_debe8b33362c8c69873b95f8e098d93d | p@chr2:196990526..196990535, - |
| 3.36e-113 | FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_ebfd030de43a38d4f858311c3c620b71 | p5@PHACTR1 |
| 3.36e-113 | FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_ebfd030de43a38d4f858311c3c620b71 | p5@PHACTR1 |
| 4.26e-113 | FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_3393150407307b22e1f775fbc8507a17 | p@chr10:10504464..10504475, + |
| 4.26e-113 | FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_3393150407307b22e1f775fbc8507a17 | p@chr10:10504464..10504475, + |
| 4.73e-113 | FFCP PHASE1:Hg19::chr12:49931764..49931791,+#_dec6e53fc6d655709e3a985cb561469c | p@chr12:49931764..49931791, + |
| 4.73e-113 | FFCP PHASE2:Hg19::chr12:49931764..49931791,+#_dec6e53fc6d655709e3a985cb561469c | p@chr12:49931764..49931791, + |
| 5.78e-113 | FFCP PHASE2:Hg19::chr4:46995726..46995765,+#_c9987155e56b8da40185d05dc48fb234 | p5@GABRB1 |
| 5.78e-113 | FFCP PHASE1:Hg19::chr4:46995726..46995765,+#_c9987155e56b8da40185d05dc48fb234 | p5@GABRB1 |
| 5.91e-113 | FFCP PHASE1:Hg19::chr12:99548410..99548419,-#_ec168d3bd454dd55d660396e9cec6eb3 | p15@ANKS1B |
| 5.91e-113 | FFCP PHASE2:Hg19::chr12:99548410..99548419,-#_ec168d3bd454dd55d660396e9cec6eb3 | p15@ANKS1B |
| 7.11e-113 | FFCP PHASE1:Hg19::chr16:30418387..30418422,+#_4a6a710e20c13f25f612159d6f516300 | p4@ZNF771 |
| 7.11e-113 | FFCP PHASE2:Hg19::chr16:30418387..30418422,+#_4a6a710e20c13f25f612159d6f516300 | p4@ZNF771 |
| 8.17e-113 | FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_dbde60f2b726f4eb7003027002bbcaf2 | p@chr4:6514469..6514483, - |
| 8.17e-113 | FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_dbde60f2b726f4eb7003027002bbcaf2 | p@chr4:6514469..6514483, - |
| 9.49e-113 | FFCP PHASE1:Hg19::chr17:9929636..9929643,-#_391890ce9cbb158c432e621f1708d914 | p24@GAS7 |
| 9.49e-113 | FFCP PHASE2:Hg19::chr17:9929636..9929643,-#_391890ce9cbb158c432e621f1708d914 | p24@GAS7 |
| 3.94e-112 | FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_0cf2fcd0f1afce892fb7e1b8ef3d33de | p2@FXYD7 |
| 3.94e-112 | FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_0cf2fcd0f1afce892fb7e1b8ef3d33de | p2@FXYD7 |
| 6.21e-112 | FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_dd47aa284b812eb756bf820ad5e3bfc7 | p3@GABRB2 |
| 6.21e-112 | FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_dd47aa284b812eb756bf820ad5e3bfc7 | p3@GABRB2 |
| 3.31e-111 | FFCP PHASE1:Hg19::chr1:70035053..70035078,+#_212f119578940c77d5ae32b98592f665 | p@chr1:70035053..70035078, + |
| 3.31e-111 | FFCP PHASE2:Hg19::chr1:70035053..70035078,+#_212f119578940c77d5ae32b98592f665 | p@chr1:70035053..70035078, + |
| 3.63e-111 | FFCP PHASE2:Hg19::chr16:14280496..14280512,+#_66c97d80cf407f788479b16b78ffcf98 | p9@MKL2 |
| 3.63e-111 | FFCP PHASE1:Hg19::chr16:14280496..14280512,+#_66c97d80cf407f788479b16b78ffcf98 | p9@MKL2 |
| 5.3e-111 | FFCP PHASE2:Hg19::chr2:173600214..173600253,+#_d0502efc237ea0a7f077b20b16159613 | p7@RAPGEF4 |
| 5.3e-111 | FFCP PHASE1:Hg19::chr2:173600214..173600253,+#_d0502efc237ea0a7f077b20b16159613 | p7@RAPGEF4 |
| 5.64e-111 | FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_e78c541ee6ee1f878b54ccd7b5e0b44a | p@chr12:14134636..14134651, - |
| 5.64e-111 | FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_e78c541ee6ee1f878b54ccd7b5e0b44a | p@chr12:14134636..14134651, - |
| 6.83e-111 | FFCP PHASE2:Hg19::chr3:123813592..123813615,+#_9920fd4d292b461136f0f4345bc61b2f | p9@KALRN |
| 6.83e-111 | FFCP PHASE1:Hg19::chr3:123813592..123813615,+#_9920fd4d292b461136f0f4345bc61b2f | p9@KALRN |
| 8.08e-111 | FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_e9f4a9099958ea42c58f8f91ccdf7bf4 | p2@LMTK3 |
| 8.08e-111 | FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_e9f4a9099958ea42c58f8f91ccdf7bf4 | p2@LMTK3 |
| 8.37e-111 | FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_472c397d539e283d9cce2b76661e3ef4 | p@chr10:11047712..11047726, + |
| 8.37e-111 | FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_472c397d539e283d9cce2b76661e3ef4 | p@chr10:11047712..11047726, + |
| 1.03e-110 | FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_24ff3d18700d6cf4b1dad22dc82783e1 | p8@OPCML |
| 1.03e-110 | FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_24ff3d18700d6cf4b1dad22dc82783e1 | p8@OPCML |
| 1.53e-110 | FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_5fc3ecfb363c97fe9d25f400aad1c3b5 | p5@MKL2 |
| 1.53e-110 | FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_5fc3ecfb363c97fe9d25f400aad1c3b5 | p5@MKL2 |
| 1.53e-110 | FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_5fc3ecfb363c97fe9d25f400aad1c3b5 | p9@PPP2R2C |
| 1.53e-110 | FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_5fc3ecfb363c97fe9d25f400aad1c3b5 | p9@PPP2R2C |
| 1.62e-110 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_3903c8e3bfbf671c692bf1d20056b946 | p5@OPCML |
| 1.62e-110 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_3903c8e3bfbf671c692bf1d20056b946 | p5@OPCML |
| 2.65e-110 | FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_d6b89f0fed02261837dcbd7b3f20e651 | p@chr1:70035018..70035044, + |
| 2.65e-110 | FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_d6b89f0fed02261837dcbd7b3f20e651 | p@chr1:70035018..70035044, + |
| 3.32e-110 | FFCP PHASE1:Hg19::chr12:45315625..45315636,-#_a46e2ae95265bf1bb881018522be55de | p7@NELL2 |
| 3.32e-110 | FFCP PHASE2:Hg19::chr12:45315625..45315636,-#_a46e2ae95265bf1bb881018522be55de | p7@NELL2 |
| 5.26e-110 | FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_bed46712776438e67949db0d2c6b9021 | p9@ANKS1B |
| 5.26e-110 | FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_bed46712776438e67949db0d2c6b9021 | p9@ANKS1B |
| 6.05e-110 | FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_26e6450f418c6f4eaa8793edce478d49 | p6@PSD |
| 6.05e-110 | FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_26e6450f418c6f4eaa8793edce478d49 | p6@PSD |
| 6.32e-110 | FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_1488cfecce3bfe529d251ab3f2c1cd2a | p12@JPH4 |
| 6.32e-110 | FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_1488cfecce3bfe529d251ab3f2c1cd2a | p12@JPH4 |
| 7.42e-110 | FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_68ef8cd8fb253659f08e7f1683d36933 | p@chr11:84431459..84431498, - |
| 7.42e-110 | FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_68ef8cd8fb253659f08e7f1683d36933 | p@chr11:84431459..84431498, - |
| 1.33e-109 | FFCP PHASE2:Hg19::chr12:14133348..14133359,-#_7b39374191870804876c7c8d1767b287 | p1@GRIN2B |
| 1.33e-109 | FFCP PHASE1:Hg19::chr12:14133348..14133359,-#_7b39374191870804876c7c8d1767b287 | p1@GRIN2B |
| 3.02e-109 | FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_6537097d67c5ca766412c69850013271 | p@chr15:30231269..30231299, - |
| 3.02e-109 | FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_6537097d67c5ca766412c69850013271 | p@chr15:30231269..30231299, - |
| 3.97e-109 | FFCP PHASE1:Hg19::chr5:89936619..89936648,+#_8a9fbef67c87e40ca88a57a571c8d064 | p5@GPR98 |
| 3.97e-109 | FFCP PHASE2:Hg19::chr5:89936619..89936648,+#_8a9fbef67c87e40ca88a57a571c8d064 | p5@GPR98 |
| 5.06e-109 | FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_a4b21edc771c163788d5ba9a88d891f2 | p@chr20:61806320..61806344, + |
| 5.06e-109 | FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_a4b21edc771c163788d5ba9a88d891f2 | p@chr20:61806320..61806344, + |
| 5.57e-109 | FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_ab629a940e557dacc29c66ed63336d24 | p@chr19:54462535..54462548, + |
| 5.57e-109 | FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_ab629a940e557dacc29c66ed63336d24 | p@chr19:54462535..54462548, + |
