UBERON:0003091: Difference between revisions
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|located_in= | |located_in= | ||
|name=thyroid primordium | |name=thyroid primordium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000949;;UBERON:0001042 | |part_of=UBERON:0000949;;UBERON:0001042 | ||
Latest revision as of 17:37, 12 September 2014
| Name: | thyroid primordium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [1] | ||
| Xrefs: |
| ||
| Comments: | In all vertebrates the thyroid arises from the ventral aspect of the second pouch[PMID:16313389]. Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm | ||
| Alt_id: | UBERON:XAO_0000444-ZFA_0001081 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0001048(primordium),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007123(pharyngeal pouch 2) |
| part_of: | UBERON:0000949(endocrine system),UBERON:0001042(chordate pharynx) |
Children
| develops from: | UBERON:0007689 (thyroid diverticulum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003091 (thyroid primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.76e-118 | FFCP PHASE2:Hg19::chr8:11333461..11333472,-#_2a5f35d1c98656a9c873763fd7c069ae | p@chr8:11333461..11333472, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr8:11333461..11333472,-#_2a5f35d1c98656a9c873763fd7c069ae | p@chr8:11333461..11333472, - |
| 6.64e-89 | FFCP PHASE1:Hg19::chr8:11333445..11333459,-#_616ed19853aa99de398910b3a48f1f3d | p@chr8:11333445..11333459, - |
| 6.64e-89 | FFCP PHASE2:Hg19::chr8:11333445..11333459,-#_616ed19853aa99de398910b3a48f1f3d | p@chr8:11333445..11333459, - |
| 3.18e-79 | FFCP PHASE2:Hg19::chr14:36645825..36645840,-#_813d8115df808fe225932533a08924cd | p5@ENST00000556013 |
| 3.18e-79 | FFCP PHASE1:Hg19::chr14:36645825..36645840,-#_813d8115df808fe225932533a08924cd | p5@ENST00000556013 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133961114..133961122,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981730..133981736,+#_12db51eae528a68c529160bb114e1dc3 | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1417430..1417444,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1417430..1417444, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134107327..134107332,+#_12db51eae528a68c529160bb114e1dc3 | p29@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899413..133899418,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133899413..133899418, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr4:88047429..88047437,+#_12db51eae528a68c529160bb114e1dc3 | p@chr4:88047429..88047437, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:36771641..36771644,+#_12db51eae528a68c529160bb114e1dc3 | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133953595..133953600,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr16:66420861..66420868,+#_12db51eae528a68c529160bb114e1dc3 | p@chr16:66420861..66420868, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:134788853..134788858,-#_12db51eae528a68c529160bb114e1dc3 | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1457500..1457511,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899244..133899254,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133882027..133882038,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133882027..133882038, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981730..133981736,+#_12db51eae528a68c529160bb114e1dc3 | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133894780..133894789,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133894780..133894789, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133961114..133961122,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134107327..134107332,+#_12db51eae528a68c529160bb114e1dc3 | p29@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:134788853..134788858,-#_12db51eae528a68c529160bb114e1dc3 | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899244..133899254,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:36771641..36771644,+#_12db51eae528a68c529160bb114e1dc3 | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133953595..133953600,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895164..133895167,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1457500..1457511,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134145709..134145716,+#_12db51eae528a68c529160bb114e1dc3 | p18@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898957..133898963,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr6:43837226..43837237,-#_12db51eae528a68c529160bb114e1dc3 | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr18:24321747..24321752,-#_12db51eae528a68c529160bb114e1dc3 | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900307..133900325,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1426812..1426834,+#_12db51eae528a68c529160bb114e1dc3 | p5@TPO |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895164..133895167,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898734..133898737,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898734..133898737, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898957..133898963,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134145709..134145716,+#_12db51eae528a68c529160bb114e1dc3 | p18@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1459933..1459941,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1459933..1459941, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900307..133900325,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1440068..1440076,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1440068..1440076, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr6:43837226..43837237,-#_12db51eae528a68c529160bb114e1dc3 | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr18:24321747..24321752,-#_12db51eae528a68c529160bb114e1dc3 | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:81421428..81421431,+#_12db51eae528a68c529160bb114e1dc3 | p11@TSHR |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1426812..1426834,+#_12db51eae528a68c529160bb114e1dc3 | p5@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133885414..133885420,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133885414..133885420, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898734..133898737,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898734..133898737, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981694..133981700,+#_12db51eae528a68c529160bb114e1dc3 | p35@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:107301447..107301451,+#_12db51eae528a68c529160bb114e1dc3 | p23@SLC26A4 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895195..133895206,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895195..133895206, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:11333494..11333497,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:11333494..11333497, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1459933..1459941,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1459933..1459941, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134145732..134145736,+#_12db51eae528a68c529160bb114e1dc3 | p27@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899004..133899013,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133899004..133899013, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133978809..133978829,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133978809..133978829, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981694..133981700,+#_12db51eae528a68c529160bb114e1dc3 | p35@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:107301447..107301451,+#_12db51eae528a68c529160bb114e1dc3 | p23@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1440068..1440076,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1440068..1440076, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898904..133898911,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898904..133898911, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900339..133900344,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133900339..133900344, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134108463..134108470,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:134108463..134108470, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133885414..133885420,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133885414..133885420, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1426850..1426859,+#_12db51eae528a68c529160bb114e1dc3 | p10@TPO |
| 3.49e-79 | FFCP PHASE1:Hg19::chr15:64421903..64421920,+#_12db51eae528a68c529160bb114e1dc3 | p@chr15:64421903..64421920, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895195..133895206,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895195..133895206, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:88388628..88388669,+#_12db51eae528a68c529160bb114e1dc3 | p6@ZNF804B |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:11333494..11333497,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:11333494..11333497, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899004..133899013,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133899004..133899013, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134145732..134145736,+#_12db51eae528a68c529160bb114e1dc3 | p27@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1459978..1459990,-#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1459978..1459990, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133978809..133978829,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133978809..133978829, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133906083..133906088,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133906083..133906088, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900339..133900344,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133900339..133900344, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1440089..1440096,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1440089..1440096, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898904..133898911,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133898904..133898911, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134108463..134108470,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:134108463..134108470, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr6:148533199..148533206,+#_12db51eae528a68c529160bb114e1dc3 | p@chr6:148533199..148533206, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1426850..1426859,+#_12db51eae528a68c529160bb114e1dc3 | p10@TPO |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981703..133981711,+#_12db51eae528a68c529160bb114e1dc3 | p31@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr14:21560489..21560506,-#_12db51eae528a68c529160bb114e1dc3 | p@chr14:21560489..21560506, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133878995..133879011,+#_12db51eae528a68c529160bb114e1dc3 | p32@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133935716..133935719,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133935716..133935719, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:88388628..88388669,+#_12db51eae528a68c529160bb114e1dc3 | p6@ZNF804B |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133906083..133906088,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133906083..133906088, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr14:67998625..67998628,-#_12db51eae528a68c529160bb114e1dc3 | p@chr14:67998625..67998628, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133948038..133948045,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133948038..133948045, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895229..133895236,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895229..133895236, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:107301340..107301345,+#_12db51eae528a68c529160bb114e1dc3 | p13@SLC26A4 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:134788828..134788834,-#_12db51eae528a68c529160bb114e1dc3 | p@chr2:134788828..134788834, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1459978..1459990,-#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1459978..1459990, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr22:31521904..31521930,+#_12db51eae528a68c529160bb114e1dc3 | p@chr22:31521904..31521930, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr6:148533199..148533206,+#_12db51eae528a68c529160bb114e1dc3 | p@chr6:148533199..148533206, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981703..133981711,+#_12db51eae528a68c529160bb114e1dc3 | p31@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1440089..1440096,+#_12db51eae528a68c529160bb114e1dc3 | p@chr2:1440089..1440096, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr22:31521904..31521930,+#_12db51eae528a68c529160bb114e1dc3 | p@chr22:31521904..31521930, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133878995..133879011,+#_12db51eae528a68c529160bb114e1dc3 | p32@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133935716..133935719,+#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133935716..133935719, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900347..133900354,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133900347..133900354, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895229..133895236,-#_12db51eae528a68c529160bb114e1dc3 | p@chr8:133895229..133895236, - |
