Personal tools

UBERON:0004140: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0004140 |name=heart field |namespace= |def="a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128] |xref=XAO:0004185...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004140
|alt_id=
|name=heart field
|namespace=
|def="a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
|xref=XAO:0004185
|is_a=UBERON:0000479;;UBERON:0004120;;UBERON:0005291
|synonym="primary heart field" EXACT [PMID:17276708, XAO:0004185]
|comment=note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138]
|comment=note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004140
|is_a=UBERON:0004120 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=primary heart field
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003081
|part_of=UBERON:0003081
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="primary heart field" EXACT [PMID:17276708, XAO:0004185]
|union_of=
|xref=XAO:0004185
}}
}}

Latest revision as of 17:44, 12 September 2014

Name:primary heart field
Namespace:FANTOM
Definition:"a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
Xrefs:
links:
XAO:0004185
Synonyms: "primary heart field" EXACT [PMID:17276708, XAO:0004185]
Comments:note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0003081(lateral plate mesoderm)



Children

develops from:UBERON:0002084 (heart left ventricle),UBERON:0003084 (heart primordium)
part of:UBERON:0007005 (cardiac mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004140 (primary heart field), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_4936d84865a5b4120d84823b991b3de8p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_4936d84865a5b4120d84823b991b3de8p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_4936d84865a5b4120d84823b991b3de8p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_4936d84865a5b4120d84823b991b3de8p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_4936d84865a5b4120d84823b991b3de8p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_4936d84865a5b4120d84823b991b3de8p@chr9:24549775..24549776, -
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_876c82e127e156bcd9288d04b56129fep@chr4:140980456..140980463, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_876c82e127e156bcd9288d04b56129fep@chr4:140980456..140980463, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_f85c8c2c5b52e3fa536cf0f05cb6af06p@chr1:137737483..137737497, -
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_f85c8c2c5b52e3fa536cf0f05cb6af06p@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_f85c8c2c5b52e3fa536cf0f05cb6af06p@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_f85c8c2c5b52e3fa536cf0f05cb6af06p@chr12:113728951..113728965, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_b212943938c74d3a42b2b9c1c33d7653p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_b212943938c74d3a42b2b9c1c33d7653p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_b212943938c74d3a42b2b9c1c33d7653p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_b212943938c74d3a42b2b9c1c33d7653p@chr4:147375200..147375220, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_f48624fa56ada770637b07a3aa632ffep@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137747382..137747385, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_f48624fa56ada770637b07a3aa632ffep@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_f48624fa56ada770637b07a3aa632ffep@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_f48624fa56ada770637b07a3aa632ffep@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_f48624fa56ada770637b07a3aa632ffep@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_f48624fa56ada770637b07a3aa632ffep2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_f48624fa56ada770637b07a3aa632ffep@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568737..55568746, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_f48624fa56ada770637b07a3aa632ffep@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_f48624fa56ada770637b07a3aa632ffep@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_f48624fa56ada770637b07a3aa632ffep@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_f48624fa56ada770637b07a3aa632ffep@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_f48624fa56ada770637b07a3aa632ffep2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_f48624fa56ada770637b07a3aa632ffep@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55568790..55568803, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_f48624fa56ada770637b07a3aa632ffep@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_f48624fa56ada770637b07a3aa632ffep@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_f48624fa56ada770637b07a3aa632ffep@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_f48624fa56ada770637b07a3aa632ffep@chr4:147375901..147375913, +
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_806adc84732937399d310fee99b00c27p@chr1:137742152..137742184, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_806adc84732937399d310fee99b00c27p@chr1:137742152..137742184, -
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr1:137742470..137742481, +
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr16:5431481..5431510, +
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_327f27ff5c0fa39f8d6a6ff2d4f55fbbp@chr16:5431481..5431510, +
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_6c94123f38557dee360c6d63eaa88a3dp1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_6c94123f38557dee360c6d63eaa88a3dp@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_6c94123f38557dee360c6d63eaa88a3dp@chr19:36193739..36193752, -
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_6c94123f38557dee360c6d63eaa88a3dp11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_6c94123f38557dee360c6d63eaa88a3dp@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_6c94123f38557dee360c6d63eaa88a3dp@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_6c94123f38557dee360c6d63eaa88a3dp@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_6c94123f38557dee360c6d63eaa88a3dp5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_6c94123f38557dee360c6d63eaa88a3dp11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_6c94123f38557dee360c6d63eaa88a3dp@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_6c94123f38557dee360c6d63eaa88a3dp5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_6c94123f38557dee360c6d63eaa88a3dp1@ENSMUST00000154140
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_7295794d63b4bd048bdbe9e947890295p@chr9:24529233..24529237, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_7295794d63b4bd048bdbe9e947890295p@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_6cda4a6bea79270a7497978cf4a5290dp6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_6cda4a6bea79270a7497978cf4a5290dp6@Usp20

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004140&oldid=3277629"