UBERON:0004708: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0009872 | ||
|comment=this class is the union of the classes limb, pectoral fin and pelvic fin. | |comment=this class is the union of the classes limb, pectoral fin and pelvic fin. | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0004357 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004708 | |||
|is_a=UBERON:0000026 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=paired limb/fin | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0010707 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="girdle-associated appendage" EXACT [UBERON:cjm];;"jointed paired lateral appendage" NARROW [UBERON:cjm];;"limb or fin" EXACT [UBERON:cjm];;"paired appendage" EXACT [VSAO:0000067];;"pectoral or pelvic appendage" EXACT [UBERON:cjm];;"pelvic/pectoral appendage" EXACT [UBERON:cjm] | ||
|union_of= | |||
|xref=VSAO:0000067 | |||
}} | }} | ||
Latest revision as of 17:47, 12 September 2014
| Name: | paired limb/fin | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"girdle-associated appendage" EXACT [UBERON:cjm] "jointed paired lateral appendage" NARROW [UBERON:cjm] "limb or fin" EXACT [UBERON:cjm] "paired appendage" EXACT [VSAO:0000067] "pectoral or pelvic appendage" EXACT [UBERON:cjm] "pelvic/pectoral appendage" EXACT [UBERON:cjm] | ||
| Comments: | this class is the union of the classes limb, pectoral fin and pelvic fin. | ||
| Alt_id: | UBERON:0009872 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000026(appendage) |
|---|---|
| develops_from: | UBERON:0004357(paired limb/fin bud) |
| part_of: | UBERON:0010707(appendage girdle complex) |
Children
| is a: | UBERON:0002101 (limb),UBERON:0004709 (pelvic appendage),UBERON:0004710 (pectoral appendage) |
|---|---|
| part of: | UBERON:0004375 (bone of free limb or fin),UBERON:0010538 (paired limb/fin segment),UBERON:0011582 (paired limb/fin skeleton) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004708 (paired limb/fin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04aba | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04aba | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04aba | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04aba | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04aba | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04aba | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04aba | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04aba | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04aba | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04aba | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04aba | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04aba | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04aba | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04aba | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04aba | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04aba | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04aba | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04aba | p@chr4:85166508..85166512, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96 | p@chr13:114067922..114067931, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_74223db40b267e117de1f1fb2483c152 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_74223db40b267e117de1f1fb2483c152 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_74223db40b267e117de1f1fb2483c152 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_74223db40b267e117de1f1fb2483c152 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_74223db40b267e117de1f1fb2483c152 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_74223db40b267e117de1f1fb2483c152 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_74223db40b267e117de1f1fb2483c152 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_74223db40b267e117de1f1fb2483c152 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_74223db40b267e117de1f1fb2483c152 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_74223db40b267e117de1f1fb2483c152 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_74223db40b267e117de1f1fb2483c152 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_74223db40b267e117de1f1fb2483c152 | p@chr18:8608021..8608050, + |
