UBERON:0004808: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An epithelium that is part of a digestive system [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004808 | |||
|is_a=UBERON:0000483 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gastrointestinal system epithelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0005409 | |part_of=UBERON:0005409 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="digestive system epithelial tissue" EXACT [OBOL:automatic];;"digestive system epithelium" EXACT [OBOL:automatic];;"epithelial tissue of digestive system" EXACT [OBOL:automatic];;"epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic];;"epithelium of digestive system" EXACT [OBOL:automatic];;"epithelium of gastrointestinal system" EXACT [OBOL:automatic];;"gastrointestinal system epithelial tissue" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=MA:0001520 | |||
}} | }} | ||
Latest revision as of 17:48, 12 September 2014
| Name: | gastrointestinal system epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"digestive system epithelial tissue" EXACT [OBOL:automatic] "digestive system epithelium" EXACT [OBOL:automatic] "epithelial tissue of digestive system" EXACT [OBOL:automatic] "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic] "epithelium of digestive system" EXACT [OBOL:automatic] "epithelium of gastrointestinal system" EXACT [OBOL:automatic] "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium) |
|---|---|
| part_of: | UBERON:0005409(gastrointestinal system) |
Children
| is a: | UBERON:0001277 (intestinal epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
... further results Mouse (Mus musculus)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004808 (gastrointestinal system epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_6d7b9a458200da842cb9e5a676280659 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_6d7b9a458200da842cb9e5a676280659 | p@chr9:35801527..35801540, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_73ac7970f57c024b92630d9944afe479 | p@chr8:122335239..122335244, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_73ac7970f57c024b92630d9944afe479 | p@chr8:122335239..122335244, + |
| 1.86e-71 | FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_2f0d2a78f34c13f8f6feba7ebd327eed | p@chr17:57201412..57201418, - |
| 1.86e-71 | FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_2f0d2a78f34c13f8f6feba7ebd327eed | p@chr17:57201412..57201418, - |
| 1.41e-68 | FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_ec6b2f284e76da4fcb3d7831ae27628a | p@chr4:155434167..155434177, + |
| 1.41e-68 | FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_ec6b2f284e76da4fcb3d7831ae27628a | p@chr4:155434167..155434177, + |
| 1.7e-67 | FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_e625ee1c72497c8468df17dc82b23820 | p@chr8:64192378..64192389, + |
| 1.7e-67 | FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_e625ee1c72497c8468df17dc82b23820 | p@chr8:64192378..64192389, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_559cbcb6a96759c394c0b719de935f00 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_559cbcb6a96759c394c0b719de935f00 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_559cbcb6a96759c394c0b719de935f00 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_559cbcb6a96759c394c0b719de935f00 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_559cbcb6a96759c394c0b719de935f00 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_559cbcb6a96759c394c0b719de935f00 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_559cbcb6a96759c394c0b719de935f00 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_559cbcb6a96759c394c0b719de935f00 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_559cbcb6a96759c394c0b719de935f00 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_559cbcb6a96759c394c0b719de935f00 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_559cbcb6a96759c394c0b719de935f00 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_559cbcb6a96759c394c0b719de935f00 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_559cbcb6a96759c394c0b719de935f00 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_559cbcb6a96759c394c0b719de935f00 | p@chr13:46093155..46093164, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_1631bc9c0417e42225f9bd1438099491 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_1631bc9c0417e42225f9bd1438099491 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_1631bc9c0417e42225f9bd1438099491 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_1631bc9c0417e42225f9bd1438099491 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_1631bc9c0417e42225f9bd1438099491 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_1631bc9c0417e42225f9bd1438099491 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_1631bc9c0417e42225f9bd1438099491 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_1631bc9c0417e42225f9bd1438099491 | p@chrX:21849506..21849512, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_19fa946e6528f56406a284ec147ace42 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_19fa946e6528f56406a284ec147ace42 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_19fa946e6528f56406a284ec147ace42 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_19fa946e6528f56406a284ec147ace42 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_19fa946e6528f56406a284ec147ace42 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_19fa946e6528f56406a284ec147ace42 | p@chr11:89925073..89925074, + |
| 3.55e-65 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_4c81c540fa304761d09a59e4e626c8eb | p@chr3:122215917..122215967, - |
| 3.55e-65 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_4c81c540fa304761d09a59e4e626c8eb | p@chr3:122215917..122215967, - |
| 7.03e-65 | FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_b80ee1f9412e1603650977c49153c724 | p@chr2:143738263..143738267, + |
| 7.03e-65 | FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_b80ee1f9412e1603650977c49153c724 | p@chr2:143738263..143738267, + |
| 2.43e-61 | FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_630bbf9f85098ed12131340a758135bf | p@chr5:135465906..135465912, + |
| 2.43e-61 | FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_630bbf9f85098ed12131340a758135bf | p@chr5:135465906..135465912, + |
| 5.84e-61 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_1d1dd6db3da6465b08169eac199e1c0f | p4@Leng9 |
| 5.84e-61 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_1d1dd6db3da6465b08169eac199e1c0f | p4@Leng9 |
| 1.29e-60 | FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_5df1a227872721df502c320240308479 | p5@Leng9 |
| 1.29e-60 | FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_5df1a227872721df502c320240308479 | p5@Leng9 |
| 5.24e-58 | FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_7b57f8c7dc76ea922d9d2b907f169ba3 | p@chr12:86771033..86771037, - |
| 5.24e-58 | FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_7b57f8c7dc76ea922d9d2b907f169ba3 | p@chr12:86771033..86771037, - |
| 6.35e-57 | FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_6ff9dbf6a622c3074937b267fa12de65 | p@chr5:145119593..145119596, + |
| 6.35e-57 | FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_6ff9dbf6a622c3074937b267fa12de65 | p@chr5:145119593..145119596, + |
| 8.86e-57 | FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_5624e7bb4dd99c4c6cc66edf1c331cec | p@chr13:49066571..49066574, - |
| 8.86e-57 | FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_5624e7bb4dd99c4c6cc66edf1c331cec | p@chr13:49066571..49066574, - |
| 1.46e-56 | FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_cd6aafeabc24433728e15fbde972f9c9 | p@chr11:96797681..96797709, - |
| 1.46e-56 | FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_cd6aafeabc24433728e15fbde972f9c9 | p@chr11:96797681..96797709, - |
| 2.19e-56 | FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_d9533284a4cd86b236497f80b6a294cc | p@chr18:36576247..36576252, - |
| 2.19e-56 | FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_d9533284a4cd86b236497f80b6a294cc | p@chr18:36576247..36576252, - |
| 5.47e-56 | FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_6dc84e10a11d848e3eade02abd4469d1 | p@chr9:66888939..66888949, + |
| 5.47e-56 | FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_6dc84e10a11d848e3eade02abd4469d1 | p@chr9:66888939..66888949, + |
| 6.45e-56 | FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_f5d3a90deaee2a6ad2897f22e916a567 | p@chr17:46693370..46693378, + |
| 6.45e-56 | FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_f5d3a90deaee2a6ad2897f22e916a567 | p@chr17:46693370..46693378, + |
| 1.93e-53 | FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_a47022cb0b8b35fc2e0b5e49412b4c31 | p@chr7:52317191..52317193, + |
| 1.93e-53 | FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_a47022cb0b8b35fc2e0b5e49412b4c31 | p@chr7:52317191..52317193, + |
| 2.55e-53 | FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_a9eafdf5613f40ef1eeb3545f0d041f7 | p@chr5:135442713..135442733, + |
| 2.55e-53 | FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_a9eafdf5613f40ef1eeb3545f0d041f7 | p@chr5:135442713..135442733, + |
| 5.3e-53 | FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_3619b8678a5374e673da894b44446879 | p@chr2:38781010..38781017, + |
| 5.3e-53 | FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_3619b8678a5374e673da894b44446879 | p@chr2:38781010..38781017, + |
| 3.46e-52 | FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_f10ed4eb6886332d24d648950743f356 | p@chr10:80565428..80565433, + |
| 3.46e-52 | FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_f10ed4eb6886332d24d648950743f356 | p@chr10:80565428..80565433, + |
| 7.4e-52 | FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_35b7907014e824904fe665c6ec297d80 | p@chr11:35759012..35759018, + |
| 7.4e-52 | FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_35b7907014e824904fe665c6ec297d80 | p@chr11:35759012..35759018, + |
| 1.0e-51 | FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_ce462f648b3ecabec2808182268facef | p@chr18:66636209..66636215, - |
| 1.0e-51 | FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_ce462f648b3ecabec2808182268facef | p@chr18:66636209..66636215, - |
| 1.17e-51 | FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_0fe54cc0bba369179e0fc0bab46bace3 | p@chr16:78268076..78268083, - |
| 1.17e-51 | FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_0fe54cc0bba369179e0fc0bab46bace3 | p@chr16:78268076..78268083, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:163338283..163338286,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr1:163338283..163338286, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65277574..65277589,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p2@FLJ41278 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr8:127681013..127681042, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr13:110258158..110258170, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p14@STRBP |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:63153941..63153942,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr11:63153941..63153942, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr3:139373728..139373733, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr18:39550015..39550034, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr14:26793415..26793426, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:104610923..104610939,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr9:104610923..104610939, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127440115..127440120,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr8:127440115..127440120, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:93128346..93128356,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr1:93128346..93128356, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr10:2328652..2328660, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr16:53671764..53671771, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:159306961..159306975,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr2:159306961..159306975, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128415944..128415958,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr8:128415944..128415958, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148164659..148164667,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr3:148164659..148164667, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:68155058..68155064,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr12:68155058..68155064, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr6:8446968..8446983, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:205036975..205037009,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr2:205036975..205037009, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_18d04e2081c8a2d90b4f2bb22ad12fc5 | p@chr7:87049573..87049608, - |
