UBERON:0005085: Difference between revisions
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{{UBERON | {{UBERON | ||
|alt_id= | |alt_id= | ||
| | |comment=Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm | ||
|created_by= | |created_by= | ||
| | |def="An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005085 | |||
|is_a=UBERON:0001048 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=ectodermal placode | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000924 | |part_of=UBERON:0000924 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:50, 12 September 2014
| Name: | ectodermal placode |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788] |
| Comments: | Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium) |
|---|---|
| part_of: | UBERON:0000924(ectoderm) |
Children
| is a: | UBERON:0002546 (cranial placode),UBERON:0011814 (non-neurogenic ectodermal placode) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005085 (ectodermal placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.21e-60 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259 | p8@Osbp2 |
| 5.21e-60 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31818106..31818119, + |
| 5.21e-60 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259 | p@chr10:127668442..127668453, + |
| 5.21e-60 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259 | p@chr10:127668442..127668453, + |
| 5.21e-60 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31817987..31818013, + |
| 5.21e-60 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259 | p1@Mir184 |
| 5.21e-60 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259 | p4@Dct |
| 5.21e-60 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259 | p3@Osbp2 |
| 5.21e-60 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259 | p3@Osbp2 |
| 5.21e-60 | FFCP PHASE2:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:5876195..5876219, - |
| 5.21e-60 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259 | p@chr3:129525389..129525400, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259 | p5@Zfp365 |
| 5.21e-60 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259 | p@chr17:31815126..31815139, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259 | p1@E130218I03Rik |
| 5.21e-60 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:77532391..77532408, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:77532391..77532408, - |
| 5.21e-60 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31818263..31818276, + |
| 5.21e-60 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259 | p1@Mir184 |
| 5.21e-60 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259 | p6@Celf1 |
| 5.21e-60 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259 | p5@Zfp365 |
| 5.21e-60 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259 | p@chr3:129525389..129525400, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31817987..31818013, + |
| 5.21e-60 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259 | p@chr17:31815126..31815139, - |
| 5.21e-60 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:77532283..77532316, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31818263..31818276, + |
| 5.21e-60 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:77532283..77532316, - |
| 5.21e-60 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259 | p@chr17:31818106..31818119, + |
| 5.21e-60 | FFCP PHASE1:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259 | p@chr11:5876195..5876219, - |
| 5.21e-60 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259 | p4@Dct |
| 5.21e-60 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259 | p8@Osbp2 |
| 5.21e-60 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259 | p6@Celf1 |
| 5.21e-60 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259 | p1@E130218I03Rik |
| 5.21e-60 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259 | p@chr16:21743134..21743139, - |
| 5.21e-60 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259 | p@chr16:21743134..21743139, - |
| 3.12e-54 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0 | p@chr7:64675015..64675028, + |
| 3.12e-54 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0 | p@chr7:64675015..64675028, + |
| 3.12e-54 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0 | p3@LOC100504989, p3@Timeless |
| 3.12e-54 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0 | p3@LOC100504989, p3@Timeless |
| 3.6e-54 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78e | p@chr6:97891135..97891147, + |
| 3.6e-54 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78e | p6@Pax6 |
| 3.6e-54 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78e | p@chr6:97891135..97891147, + |
| 3.6e-54 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78e | p6@Pax6 |
| 4.15e-54 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404 | p1@4933429O19Rik |
| 4.15e-54 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404 | p1@4933429O19Rik |
| 1.94e-53 | FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr14:49501519..49501530, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112688342..112688357, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr1:38092538..38092550, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_e2893feaec9dd349ee48f2e56700d837 | p1@Rpgrip1 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112690963..112690994, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_e2893feaec9dd349ee48f2e56700d837 | p5@LOC100504989, p5@Timeless |
| 1.94e-53 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_e2893feaec9dd349ee48f2e56700d837 | p1@ENSMUST00000173365 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31818215..31818239, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31816514..31816526, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112690963..112690994, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_e2893feaec9dd349ee48f2e56700d837 | p1@Pdc |
| 1.94e-53 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr1:65147201..65147212, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr1:65146997..65147021, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_e2893feaec9dd349ee48f2e56700d837 | p3@Gngt2 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112686483..112686494, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112692580..112692595, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31818629..31818644, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_e2893feaec9dd349ee48f2e56700d837 | p11@Rnf123 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837 | p3@Rrh |
| 1.94e-53 | FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_e2893feaec9dd349ee48f2e56700d837 | p2@Rrh |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr8:77582172..77582183, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_e2893feaec9dd349ee48f2e56700d837 | p1@Gm4792 |
| 1.94e-53 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_e2893feaec9dd349ee48f2e56700d837 | p5@LOC100504989, p5@Timeless |
| 1.94e-53 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr7:28282354..28282365, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_e2893feaec9dd349ee48f2e56700d837 | p11@Rnf123 |
| 1.94e-53 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_e2893feaec9dd349ee48f2e56700d837 | p2@Hsd17b12 |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:113507470..113507483, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:113506006..113506025, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_e2893feaec9dd349ee48f2e56700d837 | p6@Fbxo27 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112675556..112675574, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_e2893feaec9dd349ee48f2e56700d837 | p1@ENSMUST00000173365 |
| 1.94e-53 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31816584..31816600, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr8:77582194..77582219, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr1:65147224..65147236, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr6:115162924..115162933, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112686483..112686494, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837 | p3@Rrh |
| 1.94e-53 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31818215..31818239, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_e2893feaec9dd349ee48f2e56700d837 | p2@Hsd17b12 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr10:127668480..127668491, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr8:77582194..77582219, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr10:127668480..127668491, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112696408..112696421, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_e2893feaec9dd349ee48f2e56700d837 | p1@Impg2 |
| 1.94e-53 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31816514..31816526, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:113507470..113507483, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr15:36655026..36655032, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:113504891..113504916, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112681470..112681483, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112675556..112675574, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112691047..112691066, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr6:115162924..115162933, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112690729..112690741, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31817947..31817965, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr5:112691047..112691066, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_e2893feaec9dd349ee48f2e56700d837 | p@chr17:31816584..31816600, + |
