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UBERON:0002546

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Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_e751c663870c04b3e9be3a6d17109921p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_e751c663870c04b3e9be3a6d17109921p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_e751c663870c04b3e9be3a6d17109921p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_e751c663870c04b3e9be3a6d17109921p18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921-, p@chr11:8405038..8405048
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_e751c663870c04b3e9be3a6d17109921p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_e751c663870c04b3e9be3a6d17109921p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_e751c663870c04b3e9be3a6d17109921p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_e751c663870c04b3e9be3a6d17109921+, p@chr18:81314626..81314636
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_e751c663870c04b3e9be3a6d17109921p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_e751c663870c04b3e9be3a6d17109921p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_e751c663870c04b3e9be3a6d17109921p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_e751c663870c04b3e9be3a6d17109921p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_e751c663870c04b3e9be3a6d17109921p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_e751c663870c04b3e9be3a6d17109921p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_e751c663870c04b3e9be3a6d17109921p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921p@chr1:194818647..194818660, -

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