Personal tools

UBERON:0002546

From FANTOM5_SSTAR

Jump to: navigation, search

Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_e751c663870c04b3e9be3a6d17109921p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_e751c663870c04b3e9be3a6d17109921p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_e751c663870c04b3e9be3a6d17109921p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_e751c663870c04b3e9be3a6d17109921p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_e751c663870c04b3e9be3a6d17109921p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_e751c663870c04b3e9be3a6d17109921p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_e751c663870c04b3e9be3a6d17109921p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_e751c663870c04b3e9be3a6d17109921p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_e751c663870c04b3e9be3a6d17109921p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_e751c663870c04b3e9be3a6d17109921p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_e751c663870c04b3e9be3a6d17109921p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_e751c663870c04b3e9be3a6d17109921p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_e751c663870c04b3e9be3a6d17109921p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_e751c663870c04b3e9be3a6d17109921p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_e751c663870c04b3e9be3a6d17109921p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_e751c663870c04b3e9be3a6d17109921p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_e751c663870c04b3e9be3a6d17109921p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_e751c663870c04b3e9be3a6d17109921p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_e751c663870c04b3e9be3a6d17109921p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_e751c663870c04b3e9be3a6d17109921p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +