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UBERON:0002546

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Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_e751c663870c04b3e9be3a6d17109921p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_e751c663870c04b3e9be3a6d17109921p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_e751c663870c04b3e9be3a6d17109921p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_e751c663870c04b3e9be3a6d17109921p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_e751c663870c04b3e9be3a6d17109921p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_e751c663870c04b3e9be3a6d17109921p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_e751c663870c04b3e9be3a6d17109921p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_e751c663870c04b3e9be3a6d17109921p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_e751c663870c04b3e9be3a6d17109921p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_e751c663870c04b3e9be3a6d17109921p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_e751c663870c04b3e9be3a6d17109921p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_e751c663870c04b3e9be3a6d17109921p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_e751c663870c04b3e9be3a6d17109921p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_e751c663870c04b3e9be3a6d17109921p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_e751c663870c04b3e9be3a6d17109921p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_e751c663870c04b3e9be3a6d17109921p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_e751c663870c04b3e9be3a6d17109921p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_e751c663870c04b3e9be3a6d17109921p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_e751c663870c04b3e9be3a6d17109921p7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_e751c663870c04b3e9be3a6d17109921p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_e751c663870c04b3e9be3a6d17109921p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_e751c663870c04b3e9be3a6d17109921p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971357..93971363, -

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