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{{UBERON
{{UBERON
|id=UBERON:0005254
|alt_id=
|name=upper leg mesenchyme
|namespace=
|def="A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
|xref=EHDAA2:0002132;;EMAPA:17501;;VHOG:0000506
|is_a=UBERON:0003860
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005254
|is_a=UBERON:0003860
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=upper leg mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000376
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0002132;;EMAPA:17501;;VHOG:0000506
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:upper leg mesenchyme
Namespace:FANTOM
Definition:"A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0002132
EMAPA:17501

VHOG:0000506

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003860(hindlimb mesenchyme)
part_of:UBERON:0000376(hindlimb stylopod)



Children

is a:UBERON:0006234 (femur pre-cartilage condensation),UBERON:0010129 (femur cartilage element)
part of:UBERON:0010129 (femur cartilage element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005254 (upper leg mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_e9573575df5e7f169599785be3ad7b5ap26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_e9573575df5e7f169599785be3ad7b5ap26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_475a3102dd510e43dcc58981f8b23bdep@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_475a3102dd510e43dcc58981f8b23bdep@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_475a3102dd510e43dcc58981f8b23bdep@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_475a3102dd510e43dcc58981f8b23bdep@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_475a3102dd510e43dcc58981f8b23bdep@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_475a3102dd510e43dcc58981f8b23bdep@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_5f77c7e478c0010ea0ac1cd04a582204p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_5f77c7e478c0010ea0ac1cd04a582204p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_019a9839e70f3f052c9cfcc78672493cp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_019a9839e70f3f052c9cfcc78672493cp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_d0b05a2ee4d4f45480a86fbfa2a3e42fp@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_3b20d80e8ea62b17d196dce170b79f81p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_3b20d80e8ea62b17d196dce170b79f81p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_75e28b971f5cdf65122f37add57b6d95p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_75e28b971f5cdf65122f37add57b6d95p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_57d9bd5b5e2c939bf9a7a63d2511782ap3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_57d9bd5b5e2c939bf9a7a63d2511782ap3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_14b1f476d52a6ee69f0ad51feaa0af36p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_14b1f476d52a6ee69f0ad51feaa0af36p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_50515a6f70206ed24fc12a37979f0d16p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_50515a6f70206ed24fc12a37979f0d16p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_b32997eb9cdd769d40beaeeb84cd1f19p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_b32997eb9cdd769d40beaeeb84cd1f19p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_7d66562aa17e3e928670bcf6d3f0ed30p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_7d66562aa17e3e928670bcf6d3f0ed30p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_e0cb2db6f55d135d15a5080f7126fc60p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_e0cb2db6f55d135d15a5080f7126fc60p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_e0cb2db6f55d135d15a5080f7126fc60p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_e0cb2db6f55d135d15a5080f7126fc60p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_227308d1b39ecb2c9ea7cba1efad79d5p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_227308d1b39ecb2c9ea7cba1efad79d5p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_227308d1b39ecb2c9ea7cba1efad79d5p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_227308d1b39ecb2c9ea7cba1efad79d5p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_90c83596009db71833375cde083c1ee2p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_90c83596009db71833375cde083c1ee2p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_b8b29716ab511d7616a55c111d8f6f1ep@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_b8b29716ab511d7616a55c111d8f6f1ep@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_b8b29716ab511d7616a55c111d8f6f1ep@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_b8b29716ab511d7616a55c111d8f6f1ep@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_13be13c099efaeac9edf6c351f35e817p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_13be13c099efaeac9edf6c351f35e817p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_29057ce622693fe816d8a130d70d20b3p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_29057ce622693fe816d8a130d70d20b3p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_29057ce622693fe816d8a130d70d20b3p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_29057ce622693fe816d8a130d70d20b3p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_1f8629b3ca8bd6115d9f45c92f7988fap@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_1f8629b3ca8bd6115d9f45c92f7988fap@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_dcba6ad786b83e9fa0ff6b3a37f6307bp2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_dcba6ad786b83e9fa0ff6b3a37f6307bp2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_1cdcb243e689befd71626d4dd7f4f2f9p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_1cdcb243e689befd71626d4dd7f4f2f9p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_3cb91e6c5446274cd367d70cd44b5be7p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_3cb91e6c5446274cd367d70cd44b5be7p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_d8a60737312382a52bcbe7e41427125ep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_d8a60737312382a52bcbe7e41427125ep1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_d8a60737312382a52bcbe7e41427125ep1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_d8a60737312382a52bcbe7e41427125ep@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_226f8a27272002d1a98f0bd605fe1214p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_226f8a27272002d1a98f0bd605fe1214p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_226f8a27272002d1a98f0bd605fe1214p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_226f8a27272002d1a98f0bd605fe1214p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_c70f61671a06fe762fa97723d0c300dep@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_c70f61671a06fe762fa97723d0c300dep@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_c8f1afede311b7412e7dec0cde73e1d8p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_c8f1afede311b7412e7dec0cde73e1d8p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_7070a74fcb2295063aef7129e1f725f5p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_7070a74fcb2295063aef7129e1f725f5p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_c6de5ee30668ced8cd8957aedebc0195p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_c6de5ee30668ced8cd8957aedebc0195p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_80ea28673050d8ee19c5dbadeffb3c32p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_80ea28673050d8ee19c5dbadeffb3c32p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_b594a55bce1cda1253d4e52ff74b54c2p7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_b594a55bce1cda1253d4e52ff74b54c2p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_55e981a427e3315a7431d9e7b9818e60p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_55e981a427e3315a7431d9e7b9818e60p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_55e981a427e3315a7431d9e7b9818e60p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_55e981a427e3315a7431d9e7b9818e60p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_c9998240acf52f0b6cdfbf7842e9c5afp4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_c9998240acf52f0b6cdfbf7842e9c5afp4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_848c46c7b54c4d53531c127ee6023370p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_848c46c7b54c4d53531c127ee6023370p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_4fe90fdf16d60864798d124767594072p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_4fe90fdf16d60864798d124767594072p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_4fe90fdf16d60864798d124767594072p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_4fe90fdf16d60864798d124767594072p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_939b95742ece16e2040c08d11a9d7523p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_939b95742ece16e2040c08d11a9d7523p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_939b95742ece16e2040c08d11a9d7523p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_939b95742ece16e2040c08d11a9d7523p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_b1df2c38143f293633f8dc6810b46f20p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_b1df2c38143f293633f8dc6810b46f20p2@Siglec15

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