Personal tools

UBERON:0005282: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005282
|alt_id=
|name=ventricular system of brain
|namespace=
|def=
|xref=EV:0100306;;FMA:242787;;VHOG:0000005
|is_a=UBERON:0000467;;UBERON:0004121
|synonym="brain ventricular system" EXACT [VHOG:0000005]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005282
|is_a=UBERON:0000467 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=ventricular system of brain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000955;;UBERON:0005281
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="brain ventricular system" EXACT [VHOG:0000005]
|union_of=
|xref=EV:0100306;;FMA:242787;;VHOG:0000005
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:ventricular system of brain
Namespace:FANTOM
Xrefs:
links:

EV:0100306
FMA:242787

VHOG:0000005
Synonyms: "brain ventricular system" EXACT [VHOG:0000005]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0000955(brain),UBERON:0005281(ventricular system of central nervous system)



Children

part of:UBERON:0004086 (brain ventricle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005282 (ventricular system of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_8bcf7c51d265011948bbc6b9ae5cbb8bp58@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_8bcf7c51d265011948bbc6b9ae5cbb8bp58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_8bcf7c51d265011948bbc6b9ae5cbb8bp55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_8bcf7c51d265011948bbc6b9ae5cbb8bp55@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_7a6d23371867ed1d59574a39d98777d4p@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_7a6d23371867ed1d59574a39d98777d4p@chr8:24997361..24997368, -
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_b9cc68b24ae60df94a9ada71862ba4b9p73@SEPT9
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_b9cc68b24ae60df94a9ada71862ba4b9p73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_b9cc68b24ae60df94a9ada71862ba4b9p@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_b9cc68b24ae60df94a9ada71862ba4b9p@chr3:146517344..146517356, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_03ae7640b8e54335db1227337b2b36e8p@chr12:15941738..15941768, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_03ae7640b8e54335db1227337b2b36e8p@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_213d447f13b873441cc8627161f3d9bap@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_213d447f13b873441cc8627161f3d9bap@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_d678f58087567a3eaa5c337cdf3fcdc2p7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_d678f58087567a3eaa5c337cdf3fcdc2p7@FLVCR2
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_d678f58087567a3eaa5c337cdf3fcdc2p7@OBFC1
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_d678f58087567a3eaa5c337cdf3fcdc2p7@OBFC1
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_1e5d919b1bb8a7e8408bd3b05d89faffp@chr16:65159735..65159744, -
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_1e5d919b1bb8a7e8408bd3b05d89faffp@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_631b4ea2a9034476292efbab770acfb7p20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_631b4ea2a9034476292efbab770acfb7p20@EBF1
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_8c5d6a241ca1a119b6350c433ae4c68ap@chr11:60680190..60680212, +
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_8c5d6a241ca1a119b6350c433ae4c68ap@chr11:60680190..60680212, +
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_97a7df09921390a9cfae825ed14ca65fp7@METTL11A
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_97a7df09921390a9cfae825ed14ca65fp7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_3f4f8e892b366c14a6f3ecbefd3d4a1bp@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_3f4f8e892b366c14a6f3ecbefd3d4a1bp@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_ab0a2bd5d746866d66c352bde0363baap8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_ab0a2bd5d746866d66c352bde0363baap8@ENPEP
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_7a6d2f31bc7c10b9f58fd6ca17951818p3@ALX4
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_7a6d2f31bc7c10b9f58fd6ca17951818p3@ALX4
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_28c8906eecf59eb7cfb633670927a63ap@chr1:236203048..236203055, -
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_28c8906eecf59eb7cfb633670927a63ap@chr1:236203048..236203055, -
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_b27a574afe5ec9e3e5351a498702d946p20@RIMS1
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_b27a574afe5ec9e3e5351a498702d946p20@RIMS1
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_aa0556784c2492e8e9bfc87a600eae20p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_aa0556784c2492e8e9bfc87a600eae20p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_d77311ad1b7dcfc253997a76ec07dabbp30@PRKCH
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_d77311ad1b7dcfc253997a76ec07dabbp30@PRKCH
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_b1c002425682b8f0e2e33c8508c72cd3p5@CMKLR1
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_b1c002425682b8f0e2e33c8508c72cd3p5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_33f07bcda6b6cdea9f09dc43bdb3054fp11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_33f07bcda6b6cdea9f09dc43bdb3054fp11@SLC25A25
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_bbcbd6e981304768bc46ea64a6b8a1f2p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_bbcbd6e981304768bc46ea64a6b8a1f2p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_bbcbd6e981304768bc46ea64a6b8a1f2p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_bbcbd6e981304768bc46ea64a6b8a1f2p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_bbcbd6e981304768bc46ea64a6b8a1f2p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_bbcbd6e981304768bc46ea64a6b8a1f2p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_bbcbd6e981304768bc46ea64a6b8a1f2p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_bbcbd6e981304768bc46ea64a6b8a1f2p17@PVT1
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_ec99794b38b666bdfe00ee11c1f1dc58p3@MOGAT1
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_ec99794b38b666bdfe00ee11c1f1dc58p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_5439134d12bcf549bbe679360b9978dep@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_5439134d12bcf549bbe679360b9978dep@chr5:134260455..134260471, -
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_5439134d12bcf549bbe679360b9978dep3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_5439134d12bcf549bbe679360b9978dep3@AB464362
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_f468874f35f71e8ba27560d0741a0665p@chr16:65159902..65159909, -
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_f468874f35f71e8ba27560d0741a0665p@chr16:65159902..65159909, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_c384d0d556f1e49ddd8d87e15a6ff664p@chr5:149537807..149537827, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_c384d0d556f1e49ddd8d87e15a6ff664p@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_c0c2e73803b532b7e511ef645ea6789bp6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_c0c2e73803b532b7e511ef645ea6789bp6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_7843a9a85861b51346a69fd760e7ad89p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_7843a9a85861b51346a69fd760e7ad89p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_84609579bbc026081d889d21433667cep@chr5:40910094..40910097, +
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_84609579bbc026081d889d21433667cep@chr5:40910094..40910097, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_cd15e4746869d46f1a1929cd2d25f363p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_cd15e4746869d46f1a1929cd2d25f363p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_ace14d0e0a5d1904c9a82076471710d9p2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_ace14d0e0a5d1904c9a82076471710d9p2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_a23ad7b2743e9d978527623e22c2cf7bp@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_a23ad7b2743e9d978527623e22c2cf7bp@chr6:129504885..129504896, -
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1f6dcab40d27e5fe0a4d135547600c21p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1f6dcab40d27e5fe0a4d135547600c21p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_1f6dcab40d27e5fe0a4d135547600c21p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_1f6dcab40d27e5fe0a4d135547600c21p@chr12:279773..279812, +
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_cc2757ced8b300e1834e481ae3c19fb3p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_cc2757ced8b300e1834e481ae3c19fb3p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_109ee6de4a9e30fdd19c104152e274d5p5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_109ee6de4a9e30fdd19c104152e274d5p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_dc98c371082ac31e624ca38549e82d75p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_dc98c371082ac31e624ca38549e82d75p@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_47ac51ba08e703847c3194f5358e46c0p6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_47ac51ba08e703847c3194f5358e46c0p6@MYO1B
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_92ae268684fc27e12051273174890478p@chr3:147088197..147088208, -
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_92ae268684fc27e12051273174890478p@chr3:147088197..147088208, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_ec5a360860eb49e4f5bbd01a7212c81bp@chr17:1013251..1013277, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_ec5a360860eb49e4f5bbd01a7212c81bp@chr17:1013251..1013277, -
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_457f8097b1b853c97e46cb264c112caep@chr11:60640905..60640919, +
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_457f8097b1b853c97e46cb264c112caep@chr11:60640905..60640919, +
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_39b16955d94ec0bbc6be978a037e8f47p49@SEPT9
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_39b16955d94ec0bbc6be978a037e8f47p49@SEPT9
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_554d861d1e0c2e76e73b6fa59c7844d2p30@ST5
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_554d861d1e0c2e76e73b6fa59c7844d2p30@ST5
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_f0dca8c4059bcb0058759938778c8507p2@AB527577, p2@CU693346
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_f0dca8c4059bcb0058759938778c8507p2@AB527577, p2@CU693346
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_1acdc1daec741a5d3ad174f6978a9ceep6@CCDC86
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_1acdc1daec741a5d3ad174f6978a9ceep6@CCDC86

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005282&oldid=3277753"