Personal tools

UBERON:0005408: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005408
|alt_id=
|name=circumventricular organ
|namespace=
|def="Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
|xref=FMA:84081;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;MA:0002942;;NIF_GrossAnatomy:nlx_anat_20090312
|is_a=UBERON:0002616
|synonym="circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312];;"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
|comment=AO notes: MA subdivides into sensory and secretory
|comment=AO notes: MA subdivides into sensory and secretory
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005408
|is_a=UBERON:0002616
|is_obsolete=
|located_in=
|located_in=
|name=circumventricular organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000955
|part_of=UBERON:0000955
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312];;"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
|union_of=
|xref=FMA:84081;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;MA:0002942;;NIF_GrossAnatomy:nlx_anat_20090312
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:circumventricular organ
Namespace:FANTOM
Definition:"Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs]
Xrefs:
links:

FMA:84081
[ Gray734.png Gray734.png]
MA:0002942

NIF_GrossAnatomy:nlx_anat_20090312
Synonyms: "circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
"CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312]
Comments:AO notes: MA subdivides into sensory and secretory

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0010134 (secretory circumventricular organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005408 (circumventricular organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:108602341..108602352,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:108602341..108602352, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473205..135473218,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_b3259e9f673ae942fe92d28dd8110bccp7@TULP4
3.29e-195FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17064630..17064651, +
3.29e-195FFCP PHASE2:Hg19::chr11:74951707..74951719,+#_b3259e9f673ae942fe92d28dd8110bccp9@LOC100507050
3.29e-195FFCP PHASE2:Hg19::chr8:135515939..135515941,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135515939..135515941, +
3.29e-195FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18042584..18042593, -
3.29e-195FFCP PHASE2:Hg19::chr2:216447404..216447411,-#_b3259e9f673ae942fe92d28dd8110bccp1@ENST00000457625
3.29e-195FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9228468..9228494, -
3.29e-195FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_b3259e9f673ae942fe92d28dd8110bccp@chr11:84530787..84530803, +
3.29e-195FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041244..18041266, -
3.29e-195FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_b3259e9f673ae942fe92d28dd8110bccp@chr12:55422858..55422866, +
3.29e-195FFCP PHASE1:Hg19::chr2:108616342..108616384,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:108616342..108616384, +
3.29e-195FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_b3259e9f673ae942fe92d28dd8110bccp1@BC014398
3.29e-195FFCP PHASE2:Hg19::chr8:135474173..135474185,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135474173..135474185, -
3.29e-195FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:18036005..18036011, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041206..18041211, -
3.29e-195FFCP PHASE2:Hg19::chr1:57914399..57914402,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:57914399..57914402, +
3.29e-195FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9194488..9194491, -
3.29e-195FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:72297712..72297715, -
3.29e-195FFCP PHASE2:Hg19::chr5:136328601..136328607,-#_b3259e9f673ae942fe92d28dd8110bccp25@SPOCK1
3.29e-195FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_b3259e9f673ae942fe92d28dd8110bccp5@AANAT
3.29e-195FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:50898098..50898107, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135504405..135504410, -
3.29e-195FFCP PHASE2:Hg19::chr7:32468385..32468392,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:32468385..32468392, -
3.29e-195FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_b3259e9f673ae942fe92d28dd8110bccp15@CABP1
3.29e-195FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18067904..18067908, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:204620238..204620253, +
3.29e-195FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_b3259e9f673ae942fe92d28dd8110bccp@chr1:99798419..99798422, -
3.29e-195FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_b3259e9f673ae942fe92d28dd8110bccp6@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:55470964..55470974, -
3.29e-195FFCP PHASE1:Hg19::chr3:128170725..128170735,+#_b3259e9f673ae942fe92d28dd8110bccp@chr3:128170725..128170735, +
3.29e-195FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_b3259e9f673ae942fe92d28dd8110bccp8@CAMKMT
3.29e-195FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:54952462..54952471, -
3.29e-195FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_b3259e9f673ae942fe92d28dd8110bccp@chr18:56963107..56963117, -
3.29e-195FFCP PHASE1:Hg19::chr3:192894664..192894677,-#_b3259e9f673ae942fe92d28dd8110bccp1@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_b3259e9f673ae942fe92d28dd8110bccp@chr5:119868809..119868839, +
3.29e-195FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17185712..17185735, +
3.29e-195FFCP PHASE1:Hg19::chr9:25264978..25265001,+#_b3259e9f673ae942fe92d28dd8110bccp@chr9:25264978..25265001, +
3.29e-195FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135504314..135504320, -
3.29e-195FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_b3259e9f673ae942fe92d28dd8110bccp@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_b3259e9f673ae942fe92d28dd8110bccp@chr5:136699666..136699696, -
3.29e-195FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:72297712..72297715, -
3.29e-195FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_b3259e9f673ae942fe92d28dd8110bccp32@DMD
3.29e-195FFCP PHASE2:Hg19::chr2:17075761..17075773,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17075761..17075773, +
3.29e-195FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_b3259e9f673ae942fe92d28dd8110bccp@chr1:204620238..204620253, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473983..135473986, -
3.29e-195FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr8:87751918..87751928,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:87751918..87751928, -
3.29e-195FFCP PHASE2:Hg19::chr8:116127086..116127103,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:116127086..116127103, +
3.29e-195FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_b3259e9f673ae942fe92d28dd8110bccp2@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135520309..135520324, -
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_b3259e9f673ae942fe92d28dd8110bccp@chr14:49512240..49512248, -
3.29e-195FFCP PHASE2:Hg19::chr4:20985690..20985695,-#_b3259e9f673ae942fe92d28dd8110bccp38@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr3:54952432..54952459,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:54952432..54952459, -
3.29e-195FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_b3259e9f673ae942fe92d28dd8110bccp10@PRR16
3.29e-195FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr1:99798419..99798422,-#_b3259e9f673ae942fe92d28dd8110bccp@chr1:99798419..99798422, -
3.29e-195FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_b3259e9f673ae942fe92d28dd8110bccp@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_b3259e9f673ae942fe92d28dd8110bccp@chr13:52650530..52650533, -
3.29e-195FFCP PHASE2:Hg19::chr15:55470964..55470974,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_b3259e9f673ae942fe92d28dd8110bccp@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr2:48705144..48705150,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:48705144..48705150, +
3.29e-195FFCP PHASE2:Hg19::chr11:18053180..18053192,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51808960..51808964, -
3.29e-195FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_b3259e9f673ae942fe92d28dd8110bccp@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:17065916..17065929, +
3.29e-195FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_b3259e9f673ae942fe92d28dd8110bccp@chr10:80984180..80984190, -
3.29e-195FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_b3259e9f673ae942fe92d28dd8110bccp6@FRMPD1
3.29e-195FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr2:216447425..216447432,-#_b3259e9f673ae942fe92d28dd8110bccp2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:116085391..116085419, +
3.29e-195FFCP PHASE1:Hg19::chr5:135732675..135732680,-#_b3259e9f673ae942fe92d28dd8110bccp3@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_b3259e9f673ae942fe92d28dd8110bccp@chr13:52650486..52650491, -
3.29e-195FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_b3259e9f673ae942fe92d28dd8110bccp13@PRR16
3.29e-195FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_b3259e9f673ae942fe92d28dd8110bccp@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:18066392..18066397, -
3.29e-195FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135499228..135499260, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18041244..18041266, -
3.29e-195FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_b3259e9f673ae942fe92d28dd8110bccp@chr3:101038595..101038604, -
3.29e-195FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_b3259e9f673ae942fe92d28dd8110bccp@chrX:146290937..146290942, +
3.29e-195FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_b3259e9f673ae942fe92d28dd8110bccp@chr14:55282406..55282415, -
3.29e-195FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_b3259e9f673ae942fe92d28dd8110bccp@chr14:49512240..49512248, -
3.29e-195FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51174216..51174239, -
3.29e-195FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_b3259e9f673ae942fe92d28dd8110bccp@chr2:108602341..108602352, +
3.29e-195FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135473876..135473885, -
3.29e-195FFCP PHASE1:Hg19::chr7:9186866..9186885,-#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9186866..9186885, -
3.29e-195FFCP PHASE1:Hg19::chr20:44991864..44991887,-#_b3259e9f673ae942fe92d28dd8110bccp10@SLC35C2
3.29e-195FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_b3259e9f673ae942fe92d28dd8110bccp@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr6:13009334..13009341,-#_b3259e9f673ae942fe92d28dd8110bccp@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_b3259e9f673ae942fe92d28dd8110bccp1@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_b3259e9f673ae942fe92d28dd8110bccp@chr7:9782610..9782613, +
3.29e-195FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_b3259e9f673ae942fe92d28dd8110bccp@chr11:18067951..18067954, -
3.29e-195FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_b3259e9f673ae942fe92d28dd8110bccp@chr18:56962131..56962138, -
3.29e-195FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_b3259e9f673ae942fe92d28dd8110bccp@chr15:47662877..47662880, -
3.29e-195FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_b3259e9f673ae942fe92d28dd8110bccp@chr16:51808960..51808964, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005408&oldid=3277773"