UBERON:0005564: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005564
|name=gonad primordium
|namespace=
|def="Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
|xref=EFO:0003651;;EHDAA:5927...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Taxon notes: this is a very broad grouping class | |comment=Taxon notes: this is a very broad grouping class | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue that gives rise to the immature gonad." [ZFA:0001262] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005564 | |||
|is_a=UBERON:0001048 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gonad primordium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000990 | |part_of=UBERON:0000990 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string | |||
|subset=grouping_class;;vertebrate_core | |||
|synonym="gonadal primordium" EXACT [ZFA:0001262];;"undifferentiated gonad" EXACT [ZFA:0001262] | |||
|union_of= | |||
|xref=EFO:0003651;;EHDAA:5927;;EMAPA:17204;;RETIRED_EHDAA2:0002148;;TAO:0001262;;WBbt:0008366;;ZFA:0001262 | |||
}} | }} | ||
Latest revision as of 17:54, 12 September 2014
| Name: | gonad primordium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of tissue that gives rise to the immature gonad." [ZFA:0001262] | ||
| Xrefs: |
| ||
| Synonyms: |
"gonadal primordium" EXACT [ZFA:0001262] "undifferentiated gonad" EXACT [ZFA:0001262] | ||
| Comments: | Taxon notes: this is a very broad grouping class | ||
| Subset: |
grouping_class vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium) |
|---|---|
| part_of: | UBERON:0000990(reproductive system) |
Children
| develops from: | UBERON:0000991 (gonad) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005564 (gonad primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.75e-64 | FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121 | p7@Tulp2 |
| 6.75e-64 | FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121 | p7@Tulp2 |
| 1.36e-62 | FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82d | p2@Slc25a31 |
| 1.36e-62 | FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82d | p2@Slc25a31 |
| 1.69e-62 | FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830d | p1@Asz1 |
| 1.69e-62 | FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830d | p1@Asz1 |
| 2.43e-62 | FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4e | p@chr12:31775417..31775434, - |
| 2.43e-62 | FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4e | p@chr12:31775417..31775434, - |
| 6.68e-62 | FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26 | p6@Folr1 |
| 6.68e-62 | FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26 | p6@Folr1 |
| 4.74e-60 | FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6 | p1@Mov10l1 |
| 4.74e-60 | FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6 | p1@Mov10l1 |
| 1.66e-59 | FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259b | p1@Sycp1 |
| 1.66e-59 | FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259b | p1@Sycp1 |
| 7.89e-59 | FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528ab | p2@Asz1 |
| 7.89e-59 | FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528ab | p2@Asz1 |
| 4.05e-58 | FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2f | p4@STAR |
| 4.05e-58 | FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2f | p4@STAR |
| 5.06e-58 | FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06 | p@chr15:102277099..102277126, + |
| 5.06e-58 | FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06 | p@chr15:102277099..102277126, + |
| 5.18e-58 | FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30 | p1@Mael |
| 5.18e-58 | FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30 | p1@Mael |
| 1.46e-57 | FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220a | p3@Cst9 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220a | p3@Cst9 |
| 1.46e-57 | FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220a | p22@Rgs3 |
| 1.46e-57 | FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220a | p22@Rgs3 |
| 1.91e-57 | FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7 | p1@Fkbp6 |
| 1.91e-57 | FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7 | p@chr7:149469129..149469146, + |
| 1.91e-57 | FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7 | p1@Fkbp6 |
| 1.91e-57 | FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7 | p@chr7:149469129..149469146, + |
| 2.3e-57 | FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5 | p1@Mir202 |
| 2.3e-57 | FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5 | p1@Mir202 |
| 1.44e-56 | FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0b | p1@Hormad1 |
| 1.44e-56 | FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0b | p1@Hormad1 |
| 1.57e-56 | FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748f | p1@Hist1h2aa |
| 1.57e-56 | FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748f | p1@Hist1h2aa |
| 1.84e-56 | FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232 | p2@KLF17 |
| 1.84e-56 | FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232 | p2@KLF17 |
| 1.24e-55 | FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168 | p1@Piwil2 |
| 1.24e-55 | FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168 | p1@Piwil2 |
| 1.82e-55 | FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aad | p1@Tex12 |
| 1.82e-55 | FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aad | p1@Tex12 |
| 1.99e-55 | FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874 | p1@Cst12 |
| 1.99e-55 | FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874 | p1@Cst12 |
| 2.92e-55 | FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6 | p1@Gm949 |
| 2.92e-55 | FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6 | p1@Gm949 |
| 1.21e-54 | FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57 | p1@Fam178b |
| 1.21e-54 | FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57 | p1@Fam178b |
| 2.26e-54 | FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3 | p1@Dazl |
| 2.26e-54 | FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3 | p1@Dazl |
| 2.54e-54 | FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68 | p1@Exoc3l2 |
| 2.54e-54 | FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68 | p1@Exoc3l2 |
| 6.89e-54 | FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6d | p1@Tdrd12 |
| 6.89e-54 | FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6d | p1@Tdrd12 |
| 7.61e-54 | FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18 | p4@Taf9b |
| 7.61e-54 | FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18 | p4@Taf9b |
| 2.73e-53 | FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906c | p3@Hsd17b3 |
| 2.73e-53 | FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906c | p3@Hsd17b3 |
| 2.73e-53 | FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906c | p2@Exoc3l2 |
| 2.73e-53 | FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906c | p2@Exoc3l2 |
| 3.37e-53 | FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162 | p3@Dmrt1 |
| 3.37e-53 | FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162 | p3@Dmrt1 |
| 4.16e-53 | FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254 | p1@Tktl1 |
| 4.16e-53 | FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254 | p1@Tktl1 |
| 4.63e-53 | FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959 | p3@Tex12 |
| 4.63e-53 | FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959 | p3@Tex12 |
| 6.36e-53 | FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99 | p@chr5:26334211..26334241, + |
| 6.36e-53 | FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99 | p@chr5:26334211..26334241, + |
| 8.31e-53 | FFCP PHASE1:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p2@Fkbp6 |
| 8.31e-53 | FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p1@Sohlh1 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p2@Fkbp6 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr11:69431224..69431241, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr8:26314366..26314395, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr16:37843615..37843636, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03 | p3@Kctd14 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p1@Sohlh1 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr16:37843615..37843636, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03 | p3@Kctd14 |
| 8.31e-53 | FFCP PHASE2:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr14:63940369..63940380, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chrX:93160409..93160432, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr11:69431224..69431241, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr8:26314366..26314395, - |
| 8.31e-53 | FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chrX:93160409..93160432, - |
| 8.31e-53 | FFCP PHASE1:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03 | p@chr14:63940369..63940380, - |
| 8.63e-53 | FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26 | p5@Gstm6 |
| 8.63e-53 | FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26 | p5@Gstm6 |
| 1.03e-52 | FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8 | p2@Kctd14 |
| 1.03e-52 | FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8 | p2@Kctd14 |
| 1.84e-52 | FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3eb | p3@Tulp2 |
| 1.84e-52 | FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3eb | p3@Tulp2 |
| 2.15e-52 | FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323 | p3@Fkbp5 |
| 2.15e-52 | FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323 | p3@Fkbp5 |
| 4.88e-52 | FFCP PHASE2:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbead | p@chr6:120726529..120726551, + |
| 4.88e-52 | FFCP PHASE1:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbead | p@chr6:120726529..120726551, + |
| 1.03e-51 | FFCP PHASE2:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcd | p@chr1:182312504..182312531, + |
| 1.03e-51 | FFCP PHASE1:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcd | p@chr1:182312504..182312531, + |
| 1.67e-51 | FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65 | p@chrX:98989738..98989756, - |
| 1.67e-51 | FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65 | p@chrX:98989738..98989756, - |
| 7.03e-51 | FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910 | p1@Ccdc152 |
| 7.03e-51 | FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910 | p1@Ccdc152 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
