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{{UBERON
{{UBERON
|id=UBERON:0006553
|alt_id=
|name=renal duct
|namespace=
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|xref=ZFA:0005289
|is_a=UBERON:0000058;;UBERON:0004120;;UBERON:0006554
|synonym=
|comment=in ZFA this is defined as part of mesonephros
|comment=in ZFA this is defined as part of mesonephros
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006553
|is_a=UBERON:0000058 ;;UBERON:0006555
|is_obsolete=
|located_in=
|located_in=
|name=renal duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002113
|part_of=UBERON:0002113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=TAO:0005289;;ZFA:0005289
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:renal duct
Namespace:FANTOM
Definition:"A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
Xrefs:
links:

TAO:0005289

ZFA:0005289
Comments:in ZFA this is defined as part of mesonephros

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000058(duct),UBERON:0006555(excretory tube)
part_of:UBERON:0002113(kidney)



Children

is a:UBERON:0009201 (nephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006553 (renal duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
3.28e-58FFCP PHASE1:Mm9::chr9:65941913..65941923,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:65941913..65941923, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302813..152302821,+#_9b3409e528ac533dfd8475c41e23287dp3@Defb20
3.28e-58FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:75866210..75866235, +
3.28e-58FFCP PHASE1:Mm9::chr14:63611201..63611210,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:63611201..63611210, +
3.28e-58FFCP PHASE2:Mm9::chr2:164479340..164479350,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:164479340..164479350, +
3.28e-58FFCP PHASE1:Mm9::chr13:21381777..21381789,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21381777..21381789, -
3.28e-58FFCP PHASE2:Mm9::chr17:24670830..24670845,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:24670830..24670845, +
3.28e-58FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19141371..19141383, +
3.28e-58FFCP PHASE2:Mm9::chr1:89596972..89596981,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89596972..89596981, +
3.28e-58FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_9b3409e528ac533dfd8475c41e23287dp3@Ntsr2
3.28e-58FFCP PHASE1:Mm9::chr17:73221062..73221084,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:73221062..73221084, +
3.28e-58FFCP PHASE1:Mm9::chr13:52712765..52712772,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:52712765..52712772, +
3.28e-58FFCP PHASE2:Mm9::chr8:96014490..96014496,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:96014490..96014496, +
3.28e-58FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496372..130496393, -
3.28e-58FFCP PHASE2:Mm9::chr8:23057222..23057234,+#_9b3409e528ac533dfd8475c41e23287dp1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr2:160573108..160573123,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:160573108..160573123, +
3.28e-58FFCP PHASE2:Mm9::chr13:21378774..21378782,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21378774..21378782, -
3.28e-58FFCP PHASE2:Mm9::chr11:101959194..101959224,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:101959194..101959224, -
3.28e-58FFCP PHASE1:Mm9::chr11:20817297..20817313,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:20817297..20817313, +
3.28e-58FFCP PHASE2:Mm9::chr2:152302768..152302774,+#_9b3409e528ac533dfd8475c41e23287dp4@Defb20
3.28e-58FFCP PHASE1:Mm9::chr2:74440187..74440209,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:74440187..74440209, -
3.28e-58FFCP PHASE1:Mm9::chr1:156048695..156048707,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:156048695..156048707, +
3.28e-58FFCP PHASE2:Mm9::chr6:54359310..54359337,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:54359310..54359337, -
3.28e-58FFCP PHASE1:Mm9::chr5:31379550..31379559,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379550..31379559, +
3.28e-58FFCP PHASE2:Mm9::chr13:21383212..21383225,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21383212..21383225, -
3.28e-58FFCP PHASE2:Mm9::chr14:66521865..66521876,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:66521865..66521876, +
3.28e-58FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:75559819..75559830, +
3.28e-58FFCP PHASE1:Mm9::chr10:91753336..91753348,-#_9b3409e528ac533dfd8475c41e23287dp@chr10:91753336..91753348, -
3.28e-58FFCP PHASE2:Mm9::chr2:25349414..25349424,-#_9b3409e528ac533dfd8475c41e23287dp5@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr2:164439019..164439029,+#_9b3409e528ac533dfd8475c41e23287dp1@Wfdc6b
3.28e-58FFCP PHASE1:Mm9::chr13:21385729..21385768,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:21385729..21385768, +
3.28e-58FFCP PHASE2:Mm9::chr17:14306714..14306740,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:14306714..14306740, +
3.28e-58FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_9b3409e528ac533dfd8475c41e23287dp5@9230104L09Rik
3.28e-58FFCP PHASE1:Mm9::chrX:12571679..12571688,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:12571679..12571688, -
3.28e-58FFCP PHASE1:Mm9::chr9:26730625..26730636,-#_9b3409e528ac533dfd8475c41e23287dp3@Gm1110
3.28e-58FFCP PHASE2:Mm9::chr3:103650758..103650778,+#_9b3409e528ac533dfd8475c41e23287dp@chr3:103650758..103650778, +
3.28e-58FFCP PHASE1:Mm9::chr16:25752183..25752203,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:25752183..25752203, +
3.28e-58FFCP PHASE1:Mm9::chr14:66589365..66589371,+#_9b3409e528ac533dfd8475c41e23287dp19@Clu
3.28e-58FFCP PHASE1:Mm9::chr11:116901482..116901494,-#_9b3409e528ac533dfd8475c41e23287dp2@ENSMUST00000152401
3.28e-58FFCP PHASE2:Mm9::chr10:127470322..127470326,+#_9b3409e528ac533dfd8475c41e23287dp@chr10:127470322..127470326, +
3.28e-58FFCP PHASE1:Mm9::chr1:155722142..155722175,-#_9b3409e528ac533dfd8475c41e23287dp@chr1:155722142..155722175, -
3.28e-58FFCP PHASE2:Mm9::chr4:40010825..40010844,-#_9b3409e528ac533dfd8475c41e23287dp@chr4:40010825..40010844, -
3.28e-58FFCP PHASE2:Mm9::chr10:56515486..56515496,+#_9b3409e528ac533dfd8475c41e23287dp@chr10:56515486..56515496, +
3.28e-58FFCP PHASE2:Mm9::chr8:113585714..113585722,-#_9b3409e528ac533dfd8475c41e23287dp@chr8:113585714..113585722, -
3.28e-58FFCP PHASE1:Mm9::chr5:31377177..31377184,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31377177..31377184, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379306..21379315,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379306..21379315, -
3.28e-58FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_9b3409e528ac533dfd8475c41e23287dp1@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chr2:172632171..172632178,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:172632171..172632178, -
3.28e-58FFCP PHASE1:Mm9::chr15:54678983..54678995,-#_9b3409e528ac533dfd8475c41e23287dp@chr15:54678983..54678995, -
3.28e-58FFCP PHASE2:Mm9::chr2:167480413..167480463,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:167480413..167480463, -
3.28e-58FFCP PHASE1:Mm9::chr9:56469136..56469145,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:56469136..56469145, -
3.28e-58FFCP PHASE2:Mm9::chrX:20422498..20422506,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:20422498..20422506, +
3.28e-58FFCP PHASE1:Mm9::chr4:150092027..150092070,-#_9b3409e528ac533dfd8475c41e23287dp@chr4:150092027..150092070, -
3.28e-58FFCP PHASE1:Mm9::chr3:103650730..103650741,+#_9b3409e528ac533dfd8475c41e23287dp@chr3:103650730..103650741, +
3.28e-58FFCP PHASE1:Mm9::chr1:36016859..36016897,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:36016859..36016897, +
3.28e-58FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496372..130496393, -
3.28e-58FFCP PHASE1:Mm9::chr2:172632171..172632178,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:172632171..172632178, -
3.28e-58FFCP PHASE2:Mm9::chr13:23683348..23683398,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:23683348..23683398, +
3.28e-58FFCP PHASE1:Mm9::chr11:101959194..101959224,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:101959194..101959224, -
3.28e-58FFCP PHASE2:Mm9::chr8:19141429..19141440,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19141429..19141440, +
3.28e-58FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90155707..90155720, +
3.28e-58FFCP PHASE2:Mm9::chr9:34813361..34813403,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:34813361..34813403, -
3.28e-58FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90155966..90155989, +
3.28e-58FFCP PHASE1:Mm9::chr14:103746280..103746298,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:103746280..103746298, +
3.28e-58FFCP PHASE2:Mm9::chr14:51627616..51627623,+#_9b3409e528ac533dfd8475c41e23287dp2@Rnase10
3.28e-58FFCP PHASE1:Mm9::chr9:35651679..35651691,-#_9b3409e528ac533dfd8475c41e23287dp5@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chrX:103276578..103276585,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:103276578..103276585, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379118..21379120,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379118..21379120, -
3.28e-58FFCP PHASE2:Mm9::chr9:35585507..35585517,-#_9b3409e528ac533dfd8475c41e23287dp4@Gm17727
3.28e-58FFCP PHASE1:Mm9::chr11:59845349..59845371,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:59845349..59845371, -
3.28e-58FFCP PHASE2:Mm9::chr11:59845376..59845393,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:59845376..59845393, -
3.28e-58FFCP PHASE2:Mm9::chr18:74784728..74784738,+#_9b3409e528ac533dfd8475c41e23287dp@chr18:74784728..74784738, +
3.28e-58FFCP PHASE1:Mm9::chr1:18213651..18213663,-#_9b3409e528ac533dfd8475c41e23287dp1@Defb44-ps
3.28e-58FFCP PHASE2:Mm9::chr9:26688157..26688159,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26688157..26688159, -
3.28e-58FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379107..21379136, +
3.28e-58FFCP PHASE2:Mm9::chr14:52542661..52542668,-#_9b3409e528ac533dfd8475c41e23287dp3@Rnase13
3.28e-58FFCP PHASE2:Mm9::chr14:103746280..103746298,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:103746280..103746298, +
3.28e-58FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_9b3409e528ac533dfd8475c41e23287dp5@Spink12
3.28e-58FFCP PHASE1:Mm9::chr1:87936213..87936218,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:87936213..87936218, +
3.28e-58FFCP PHASE2:Mm9::chr6:118298429..118298448,+#_9b3409e528ac533dfd8475c41e23287dp@chr6:118298429..118298448, +
3.28e-58FFCP PHASE1:Mm9::chr8:19142604..19142612,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19142604..19142612, +
3.28e-58FFCP PHASE2:Mm9::chr1:89597834..89597840,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89597834..89597840, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901629..116901639,-#_9b3409e528ac533dfd8475c41e23287dp3@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr13:21378871..21378901,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21378871..21378901, -
3.28e-58FFCP PHASE1:Mm9::chr4:134913640..134913649,+#_9b3409e528ac533dfd8475c41e23287dp@chr4:134913640..134913649, +
3.28e-58FFCP PHASE2:Mm9::chr13:52712744..52712754,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:52712744..52712754, +
3.28e-58FFCP PHASE2:Mm9::chr2:74440187..74440209,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:74440187..74440209, -
3.28e-58FFCP PHASE2:Mm9::chr9:26611214..26611227,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26611214..26611227, -
3.28e-58FFCP PHASE1:Mm9::chr14:51670340..51670346,-#_9b3409e528ac533dfd8475c41e23287dp@chr14:51670340..51670346, -
3.28e-58FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_9b3409e528ac533dfd8475c41e23287dp21@Pgap2
3.28e-58FFCP PHASE1:Mm9::chr2:148676919..148676930,-#_9b3409e528ac533dfd8475c41e23287dp3@9230104L09Rik
3.28e-58FFCP PHASE2:Mm9::chr5:31379477..31379481,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379477..31379481, +
3.28e-58FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:23308182..23308185, +
3.28e-58FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:39707572..39707583, +
3.28e-58FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21380610..21380620, -
3.28e-58FFCP PHASE2:Mm9::chr2:25678985..25679033,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:25678985..25679033, +
3.28e-58FFCP PHASE2:Mm9::chr14:69143309..69143319,-#_9b3409e528ac533dfd8475c41e23287dp@chr14:69143309..69143319, -
3.28e-58FFCP PHASE1:Mm9::chr12:104945515..104945524,-#_9b3409e528ac533dfd8475c41e23287dp@chr12:104945515..104945524, -

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