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{{UBERON
{{UBERON
|id=UBERON:0006603
|alt_id=
|name=presumptive mesoderm
|namespace=
|def=
|xref=AAO:0000476;;EFO:0003467;;TAO:0001377;;ZFA:0001377
|is_a=UBERON:0006598
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006603
|is_a=UBERON:0006598
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=presumptive mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000307
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0000476;;EFO:0003467;;TAO:0001377;;ZFA:0001377
}}
}}

Latest revision as of 17:58, 12 September 2014

Name:presumptive mesoderm
Namespace:FANTOM
Xrefs:
links:

AAO:0000476
EFO:0003467
TAO:0001377

ZFA:0001377

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure)
part_of:UBERON:0000307(blastula)



Children

develops from:UBERON:0000926 (mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006603 (presumptive mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.38e-40FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_66b6a6ea746a34af9924a9c47dd45b83p1@DNASE1L1
6.38e-40FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_66b6a6ea746a34af9924a9c47dd45b83p1@DNASE1L1
6.15e-39FFCP PHASE2:Hg19::chr1:228270784..228270847,+#_5f379ac1cae5cd379e308083c4803090p2@ARF1
6.15e-39FFCP PHASE1:Hg19::chr1:228270784..228270847,+#_5f379ac1cae5cd379e308083c4803090p2@ARF1
9.61e-38FFCP PHASE2:Hg19::chr12:54812992..54813035,-#_6bf9e34c14b3f046f6ee108efe32bc89p1@ITGA5
9.61e-38FFCP PHASE1:Hg19::chr12:54812992..54813035,-#_6bf9e34c14b3f046f6ee108efe32bc89p1@ITGA5
1.56e-36FFCP PHASE2:Hg19::chr7:143078379..143078454,+#_437e599ad1987f8dd0e5178a9649c1c0p1@ZYX
1.56e-36FFCP PHASE1:Hg19::chr7:143078379..143078454,+#_437e599ad1987f8dd0e5178a9649c1c0p1@ZYX
2.82e-36FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_222bb116214b9dc903cbb731dc303404p6@UBE2D3
2.82e-36FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_222bb116214b9dc903cbb731dc303404p6@UBE2D3
5.32e-36FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_f6de9177af441e3dbb77e01ec860487bp3@ANPEP
5.32e-36FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_f6de9177af441e3dbb77e01ec860487bp3@ANPEP
8.45e-36FFCP PHASE1:Hg19::chr5:180229791..180229829,-#_d79d01b86b7d34eaeb4405f4a81506f6p1@MGAT1
8.45e-36FFCP PHASE2:Hg19::chr5:180229791..180229829,-#_d79d01b86b7d34eaeb4405f4a81506f6p1@MGAT1
1.6e-35FFCP PHASE2:Hg19::chr11:504446..504486,-#_4f8d2c9ad0d36fe1411d2193fa0270d8p4@RNH1
1.6e-35FFCP PHASE1:Hg19::chr11:504446..504486,-#_4f8d2c9ad0d36fe1411d2193fa0270d8p4@RNH1
2.85e-35FFCP PHASE2:Hg19::chr19:44174330..44174355,-#_7c62e8b7785eaf1805cc15e802449dbfp2@PLAUR
2.85e-35FFCP PHASE1:Hg19::chr19:44174330..44174355,-#_7c62e8b7785eaf1805cc15e802449dbfp2@PLAUR
3.37e-35FFCP PHASE1:Hg19::chr1:21616690..21616719,-#_9776b385e94fa61d9244772e59246381p4@ECE1
3.37e-35FFCP PHASE2:Hg19::chr1:21616690..21616719,-#_9776b385e94fa61d9244772e59246381p4@ECE1
5.03e-35FFCP PHASE1:Hg19::chr7:143079458..143079487,+#_2aa294948ead59ab6fed8fa345315500p4@ZYX
5.03e-35FFCP PHASE2:Hg19::chr7:143079458..143079487,+#_2aa294948ead59ab6fed8fa345315500p4@ZYX
1.17e-34FFCP PHASE1:Hg19::chr4:15704679..15704733,+#_4b543d266b225b921b26beb5d5e332a5p1@BST1
1.17e-34FFCP PHASE2:Hg19::chr4:15704679..15704733,+#_4b543d266b225b921b26beb5d5e332a5p1@BST1
1.75e-34FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_0409dc3ca20b24830403a5db468dadccp4@DNASE1L1
1.75e-34FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_0409dc3ca20b24830403a5db468dadccp4@DNASE1L1
1.89e-34FFCP PHASE1:Hg19::chr19:50015870..50015934,+#_1bf88d665d4361d2b885aa008fe51f90p2@FCGRT
1.89e-34FFCP PHASE2:Hg19::chr19:50015870..50015934,+#_1bf88d665d4361d2b885aa008fe51f90p2@FCGRT
2.1e-34FFCP PHASE1:Hg19::chr12:54813229..54813273,-#_37953128cd6f9f58bffa5d81f0830c73p3@ITGA5
2.1e-34FFCP PHASE2:Hg19::chr12:54813229..54813273,-#_37953128cd6f9f58bffa5d81f0830c73p3@ITGA5
4.33e-34FFCP PHASE1:Hg19::chr19:44174310..44174329,-#_75122842af5275486978d41bbf4a6326p1@PLAUR
4.33e-34FFCP PHASE2:Hg19::chr19:44174310..44174329,-#_75122842af5275486978d41bbf4a6326p1@PLAUR
7.52e-34FFCP PHASE2:Hg19::chr1:221052776..221052799,+#_043a94af944db3ddb7b1b3de113543ecp1@HLX
7.52e-34FFCP PHASE1:Hg19::chr1:221052776..221052799,+#_043a94af944db3ddb7b1b3de113543ecp1@HLX
8.49e-34FFCP PHASE2:Hg19::chr4:159093517..159093533,-#_b2822aeb465f5f1dfb59e705653c52acp1@FAM198B
8.49e-34FFCP PHASE1:Hg19::chr4:159093517..159093533,-#_b2822aeb465f5f1dfb59e705653c52acp1@FAM198B
3.78e-33FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_5617c38142750796d2d8a28068208b3dp1@ANPEP
3.78e-33FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_5617c38142750796d2d8a28068208b3dp1@ANPEP
3.32e-32FFCP PHASE2:Hg19::chr7:97911007..97911027,+#_dd5e1ff7d299636529541779be3dddf3p3@BRI3
3.32e-32FFCP PHASE1:Hg19::chr7:97911007..97911027,+#_dd5e1ff7d299636529541779be3dddf3p3@BRI3
5.72e-32FFCP PHASE1:Hg19::chr7:97910981..97911006,+#_666a6d5783a71d4a7af8303b56265a4ep1@BRI3
5.72e-32FFCP PHASE2:Hg19::chr7:97910981..97911006,+#_666a6d5783a71d4a7af8303b56265a4ep1@BRI3
5.73e-32FFCP PHASE2:Hg19::chr19:54371114..54371180,+#_fda0ffd47c8f107a4bf945cebcf57595p1@MYADM
5.73e-32FFCP PHASE1:Hg19::chr19:54371114..54371180,+#_fda0ffd47c8f107a4bf945cebcf57595p1@MYADM
7.25e-32FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_e42223dfc769449020d884189bdab4fcp4@UBE2D3
7.25e-32FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_e42223dfc769449020d884189bdab4fcp4@UBE2D3
7.82e-32FFCP PHASE1:Hg19::chr19:50015936..50015981,+#_a91b2a6e057f9b899ab8979111a46db5p3@FCGRT
7.82e-32FFCP PHASE2:Hg19::chr19:50015936..50015981,+#_a91b2a6e057f9b899ab8979111a46db5p3@FCGRT
8.33e-32FFCP PHASE2:Hg19::chr8:134584101..134584143,-#_52f77c524e556728bd95226bca560424p2@ST3GAL1
8.33e-32FFCP PHASE1:Hg19::chr8:134584101..134584143,-#_52f77c524e556728bd95226bca560424p2@ST3GAL1
1.49e-31FFCP PHASE1:Hg19::chr7:143078652..143078754,+#_ec2f4671206abd1764007b6493a71279p2@ZYX
1.49e-31FFCP PHASE2:Hg19::chr7:143078652..143078754,+#_ec2f4671206abd1764007b6493a71279p2@ZYX
2.42e-31FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_51c5be970d25dc696035908c4faf2adfp3@ARHGEF10L
2.42e-31FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_51c5be970d25dc696035908c4faf2adfp3@ARHGEF10L
2.88e-31FFCP PHASE1:Hg19::chr12:65153154..65153171,-#_59ad0e241142bf922edf3545ccb59d5ep2@GNS
2.88e-31FFCP PHASE2:Hg19::chr12:65153154..65153171,-#_59ad0e241142bf922edf3545ccb59d5ep2@GNS
8.04e-31FFCP PHASE2:Hg19::chr1:221053049..221053075,+#_4da06060d04e4f68169149476172edd4p3@HLX
8.04e-31FFCP PHASE1:Hg19::chr1:221053049..221053075,+#_4da06060d04e4f68169149476172edd4p3@HLX
8.77e-31FFCP PHASE2:Hg19::chr1:87170448..87170539,+#_71b40b706f7109066a33c2df20522c03p1@SH3GLB1
8.77e-31FFCP PHASE1:Hg19::chr1:87170448..87170539,+#_71b40b706f7109066a33c2df20522c03p1@SH3GLB1
9.41e-31FFCP PHASE1:Hg19::chr10:104403641..104403699,+#_2e6c2af5315ba63660acf5cd576258f7p@chr10:104403641..104403699, +
9.41e-31FFCP PHASE2:Hg19::chr10:104403641..104403699,+#_2e6c2af5315ba63660acf5cd576258f7p@chr10:104403641..104403699, +
9.71e-31FFCP PHASE2:Hg19::chr4:80994210..80994284,-#_ff3b7df796a3c7f19815c166159d5eaep2@ANTXR2
9.71e-31FFCP PHASE1:Hg19::chr4:80994210..80994284,-#_ff3b7df796a3c7f19815c166159d5eaep2@ANTXR2
9.83e-31FFCP PHASE2:Hg19::chr4:122618095..122618161,-#_7697abf8249aebff6585bf7942c5e81cp1@ANXA5
9.83e-31FFCP PHASE1:Hg19::chr4:122618095..122618161,-#_7697abf8249aebff6585bf7942c5e81cp1@ANXA5
1.49e-30FFCP PHASE1:Hg19::chr9:130616952..130616973,-#_70bcefa5e9434ed74c8b433ab3fe76e7p3@ENG
1.49e-30FFCP PHASE2:Hg19::chr9:130616952..130616973,-#_70bcefa5e9434ed74c8b433ab3fe76e7p3@ENG
1.87e-30FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_ec47d40ceeba3b5985880cfbaf558467p2@DDOST
1.87e-30FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_ec47d40ceeba3b5985880cfbaf558467p2@DDOST
3.28e-30FFCP PHASE2:Hg19::chrX:46433193..46433237,+#_cee288f4cb674b52bb4e74122b30751ep1@CHST7
3.28e-30FFCP PHASE1:Hg19::chrX:46433193..46433237,+#_cee288f4cb674b52bb4e74122b30751ep1@CHST7
3.51e-30FFCP PHASE1:Hg19::chr17:81037473..81037498,+#_f62a17e4cd02fb66d604bb1abcf90bb3p1@METRNL
3.51e-30FFCP PHASE2:Hg19::chr17:81037473..81037498,+#_f62a17e4cd02fb66d604bb1abcf90bb3p1@METRNL
3.8e-30FFCP PHASE1:Hg19::chr6:146864960..146864999,+#_aeca8c959dde8ba0e94dd8518bca70b7p1@RAB32
3.8e-30FFCP PHASE2:Hg19::chr6:146864960..146864999,+#_aeca8c959dde8ba0e94dd8518bca70b7p1@RAB32
5.98e-30FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_24c2c1d5ffb61b4c103efe4753cccac7p1@GNAI2
5.98e-30FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_24c2c1d5ffb61b4c103efe4753cccac7p1@GNAI2
6.52e-30FFCP PHASE1:Hg19::chr7:143077956..143078096,-#_876b69831d6da4bf9176f44ae9580b41p1@ENST00000429630
6.52e-30FFCP PHASE2:Hg19::chr7:143077956..143078096,-#_876b69831d6da4bf9176f44ae9580b41p1@ENST00000429630
7.62e-30FFCP PHASE2:Hg19::chr9:35732119..35732199,-#_856b0548fa62ed2273b2cbcb5344a66ap1@TLN1
7.62e-30FFCP PHASE1:Hg19::chr9:35732119..35732199,-#_856b0548fa62ed2273b2cbcb5344a66ap1@TLN1
9.35e-30FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_c2da9958d8e04e8ebe987638670e5ea8p1@TICAM2, p2@TMED7-TICAM2
9.35e-30FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_c2da9958d8e04e8ebe987638670e5ea8p1@TICAM2, p2@TMED7-TICAM2
1.51e-29FFCP PHASE1:Hg19::chr1:59762730..59762773,+#_af93b734486f71f313e03921ca7aa50dp1@FGGY
1.51e-29FFCP PHASE2:Hg19::chr1:59762730..59762773,+#_af93b734486f71f313e03921ca7aa50dp1@FGGY
1.57e-29FFCP PHASE2:Hg19::chr11:67120956..67120972,-#_a9b43684674d428a6bbf5cd8fab8b139p2@POLD4
1.57e-29FFCP PHASE1:Hg19::chr11:67120956..67120972,-#_a9b43684674d428a6bbf5cd8fab8b139p2@POLD4
1.96e-29FFCP PHASE1:Hg19::chr11:504867..504925,-#_66d3695342a4f623f32d287f8837768cp3@RNH1
1.96e-29FFCP PHASE2:Hg19::chr11:504867..504925,-#_66d3695342a4f623f32d287f8837768cp3@RNH1
3.49e-29FFCP PHASE1:Hg19::chr4:159092525..159092574,-#_13f7b4f585ffc7641f4f93c820218cdep4@FAM198B
3.49e-29FFCP PHASE2:Hg19::chr4:159092525..159092574,-#_13f7b4f585ffc7641f4f93c820218cdep4@FAM198B
5.21e-29FFCP PHASE2:Hg19::chr3:148709310..148709337,+#_ef2baba7d1dce6609d5b6c20f7c0f962p1@GYG1
5.21e-29FFCP PHASE1:Hg19::chr3:148709310..148709337,+#_ef2baba7d1dce6609d5b6c20f7c0f962p1@GYG1
6.23e-29FFCP PHASE1:Hg19::chr8:146078927..146078951,-#_06e6702d29db03c1ce7fa89aeff521e9p4@COMMD5
6.23e-29FFCP PHASE2:Hg19::chr8:146078927..146078951,-#_06e6702d29db03c1ce7fa89aeff521e9p4@COMMD5
7.59e-29FFCP PHASE2:Hg19::chr4:10118348..10118395,-#_f95e0083ac3b7502456802aa9a85350ap1@WDR1
7.59e-29FFCP PHASE1:Hg19::chr4:10118348..10118395,-#_f95e0083ac3b7502456802aa9a85350ap1@WDR1
8.57e-29FFCP PHASE1:Hg19::chr12:53694132..53694153,-#_4f3612e4966928ee66159eb43d51321cp1@ENST00000550263
8.57e-29FFCP PHASE2:Hg19::chr12:53694132..53694153,-#_4f3612e4966928ee66159eb43d51321cp1@ENST00000550263

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