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{{UBERON
{{UBERON
|id=UBERON:0010258
|alt_id=
|name=mesenchyme from rhombencephalic neural crest
|namespace=
|def=
|xref=EHDAA2:0004423
|is_a=UBERON:0007213
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003852
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010258
|is_a=UBERON:0007213
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=mesenchyme from rhombencephalic neural crest
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007213
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0004423
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:mesenchyme from rhombencephalic neural crest
Namespace:FANTOM
Xrefs:
links:
EHDAA2:0004423

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007213(mesenchyme derived from head neural crest)
develops_from:UBERON:0003852(rhombencephalon neural crest)
part_of:UBERON:0007213(mesenchyme derived from head neural crest)



Children

is a:UBERON:0005705 (primary palate mesenchyme),UBERON:0010259 (1st arch mesenchyme from neural crest),UBERON:0010334 (maxillary process mesenchyme from neural crest)
part of:UBERON:0010253 (1st arch maxillary mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010258 (mesenchyme from rhombencephalic neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffcp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffcp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffcp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffcp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffcp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffcp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffcp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffcp@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1bp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1bp14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05ep@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05ep9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05ep17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05ep17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05ep@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05ep9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440p1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8fp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8fp23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8fp@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57354143..57354152, +
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9fp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9fp12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3ap@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3ap@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96adp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96adp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96adp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96adp@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353982..57353991, -
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07p7@SHOX2
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619p@chr14:89044406..89044416, +
4.2e-29FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_c217b88c3c07949c1a2807c13840280dp@chr1:75602768..75602785, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_c217b88c3c07949c1a2807c13840280dp11@MAB21L2

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